Variant report

Variant	rs61192856
Chromosome Location	chr7:129677176-129677177
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129676636..129679298-chr7:129687794..129690270,2	K562	blood:
2	chr7:129664711..129667493-chr7:129675365..129677696,2	K562	blood:

Variant related genes	Relation type
ENSG00000201109	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs57085267	1.00[AMR][1000 genomes]
rs57351931	1.00[AMR][1000 genomes]
rs57534840	1.00[AMR][1000 genomes]
rs58432106	1.00[AMR][1000 genomes]
rs59326616	1.00[AMR][1000 genomes]
rs6960765	1.00[AMR][1000 genomes]
rs73469787	1.00[AMR][1000 genomes]
rs73469788	1.00[AMR][1000 genomes]
rs73469790	1.00[AMR][1000 genomes]
rs73469802	1.00[AMR][1000 genomes]
rs73471913	1.00[AMR][1000 genomes]
rs73471916	1.00[AMR][1000 genomes]
rs73471922	1.00[AMR][1000 genomes]
rs73471986	1.00[AMR][1000 genomes]
rs73471988	1.00[AMR][1000 genomes]
rs73471991	1.00[AMR][1000 genomes]
rs73471994	1.00[AMR][1000 genomes]
rs73471997	1.00[AMR][1000 genomes]
rs73472001	1.00[AMR][1000 genomes]
rs7808364	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831129	chr7:129525406-129702477	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1024065	chr7:129665939-129963859	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129650800-129681000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:129656000-129690200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:129656200-129682400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:129656400-129686800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:129656400-129688000	Strong transcription	Liver	Liver
6	chr7:129656600-129688400	Strong transcription	Fetal Stomach	stomach
7	chr7:129656800-129688400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr7:129656800-129689400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:129657000-129686200	Strong transcription	Fetal Thymus	thymus
10	chr7:129657000-129689200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:129657400-129678800	Strong transcription	Duodenum Mucosa	Duodenum
12	chr7:129657400-129687600	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr7:129657400-129689000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:129657600-129685200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:129657600-129689200	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr7:129657800-129678600	Strong transcription	Fetal Intestine Large	intestine
17	chr7:129658000-129679600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr7:129659400-129682400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr7:129660000-129684200	Strong transcription	Fetal Intestine Small	intestine
20	chr7:129660200-129685000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr7:129662400-129679400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:129662400-129682000	Strong transcription	Fetal Muscle Trunk	muscle
23	chr7:129662800-129689000	Strong transcription	Fetal Muscle Leg	muscle
24	chr7:129663600-129690000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr7:129664600-129690000	Weak transcription	Fetal Brain Male	brain
26	chr7:129666200-129678200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr7:129666200-129688000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr7:129666400-129687400	Weak transcription	Fetal Heart	heart
29	chr7:129666400-129689600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr7:129666400-129689800	Weak transcription	HMEC	breast
31	chr7:129666600-129679200	Weak transcription	Hela-S3	cervix
32	chr7:129667200-129688000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr7:129667200-129690800	Weak transcription	Gastric	stomach
34	chr7:129667400-129677800	Weak transcription	Brain Substantia Nigra	brain
35	chr7:129667400-129680800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr7:129667400-129682400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr7:129667400-129688000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr7:129667400-129690400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr7:129668000-129678400	Strong transcription	K562	blood
40	chr7:129668200-129688000	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr7:129668400-129679200	Strong transcription	Primary T cells from cord blood	blood
42	chr7:129669000-129677600	Weak transcription	HSMM	muscle
43	chr7:129670000-129677800	Weak transcription	Psoas Muscle	Psoas
44	chr7:129670600-129690800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr7:129671000-129681400	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr7:129671000-129682400	Strong transcription	Adipose Nuclei	Adipose
47	chr7:129671000-129682400	Strong transcription	Dnd41	blood
48	chr7:129671000-129685400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr7:129671000-129685400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr7:129671200-129679400	Strong transcription	Primary B cells from peripheral blood	blood

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