Variant report

Variant	rs73469787
Chromosome Location	chr7:129488547-129488548
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129447152..129448781-chr7:129486844..129489628,2	MCF-7	breast:
2	chr7:129481959..129484139-chr7:129487927..129489459,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs57085267	1.00[AMR][1000 genomes]
rs57351931	1.00[AMR][1000 genomes]
rs57534840	1.00[AMR][1000 genomes]
rs58432106	1.00[AMR][1000 genomes]
rs59326616	1.00[AMR][1000 genomes]
rs60013811	1.00[AMR][1000 genomes]
rs61192856	1.00[AMR][1000 genomes]
rs6960765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469778	1.00[AMR][1000 genomes]
rs73469788	1.00[AMR][1000 genomes]
rs73469790	1.00[AMR][1000 genomes]
rs73469802	1.00[AMR][1000 genomes]
rs73471913	1.00[AMR][1000 genomes]
rs73471916	1.00[AMR][1000 genomes]
rs73471922	1.00[AMR][1000 genomes]
rs73471986	1.00[AMR][1000 genomes]
rs73471988	1.00[AMR][1000 genomes]
rs73471991	1.00[AMR][1000 genomes]
rs73471994	1.00[AMR][1000 genomes]
rs73471997	1.00[AMR][1000 genomes]
rs73472001	1.00[AMR][1000 genomes]
rs7808364	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533849	chr7:129462947-129616625	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129472800-129491400	Weak transcription	Fetal Kidney	kidney
2	chr7:129475000-129534800	Weak transcription	Colonic Mucosa	Colon
3	chr7:129477800-129495400	Weak transcription	HepG2	liver
4	chr7:129477800-129498400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr7:129479200-129489800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr7:129479200-129490800	Weak transcription	Liver	Liver
7	chr7:129479200-129490800	Weak transcription	Fetal Intestine Large	intestine
8	chr7:129479200-129495600	Weak transcription	Fetal Muscle Leg	muscle
9	chr7:129479400-129493000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:129479400-129493200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr7:129479400-129543600	Weak transcription	Thymus	Thymus
12	chr7:129479600-129492600	Weak transcription	Placenta	Placenta
13	chr7:129481200-129490800	Weak transcription	Brain Anterior Caudate	brain
14	chr7:129481200-129491400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr7:129481200-129493000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr7:129481200-129493000	Weak transcription	Fetal Lung	lung
17	chr7:129481400-129499800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr7:129481400-129510000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:129483200-129489200	Enhancers	HUVEC	blood vessel
20	chr7:129483800-129489000	Enhancers	HSMM	muscle
21	chr7:129483800-129489400	Weak transcription	Fetal Intestine Small	intestine
22	chr7:129484000-129489000	Enhancers	NHDF-Ad	bronchial
23	chr7:129484000-129497000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr7:129484200-129495400	Weak transcription	Fetal Stomach	stomach
25	chr7:129484200-129498600	Weak transcription	Brain Hippocampus Middle	brain
26	chr7:129484200-129503000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:129485200-129491000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr7:129485400-129491000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr7:129485400-129498600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr7:129485400-129503800	Weak transcription	Lung	lung
31	chr7:129485600-129491000	Weak transcription	Brain Substantia Nigra	brain
32	chr7:129485600-129491600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr7:129485600-129493200	Weak transcription	Right Atrium	heart
34	chr7:129485600-129493600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr7:129485600-129493600	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr7:129485600-129493600	Weak transcription	Gastric	stomach
37	chr7:129485600-129495400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr7:129485600-129495400	Weak transcription	Fetal Thymus	thymus
39	chr7:129485600-129496000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr7:129485600-129502400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr7:129485800-129490800	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr7:129485800-129491200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr7:129485800-129491400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr7:129485800-129491800	Weak transcription	Colon Smooth Muscle	Colon
45	chr7:129485800-129493200	Weak transcription	Rectal Smooth Muscle	rectum
46	chr7:129486000-129493400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr7:129486000-129493800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr7:129486000-129495800	Weak transcription	GM12878-XiMat	blood
49	chr7:129486200-129491600	Weak transcription	Stomach Mucosa	stomach
50	chr7:129486400-129492800	Weak transcription	Adipose Nuclei	Adipose

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