Variant report

Variant	rs73469788
Chromosome Location	chr7:129497776-129497777
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs57085267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57351931	1.00[AMR][1000 genomes]
rs57534840	1.00[AMR][1000 genomes]
rs58432106	1.00[AMR][1000 genomes]
rs59326616	1.00[AMR][1000 genomes]
rs60013811	1.00[AMR][1000 genomes]
rs61192856	1.00[AMR][1000 genomes]
rs6960765	1.00[AMR][1000 genomes]
rs73469704	0.83[AFR][1000 genomes]
rs73469778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469787	1.00[AMR][1000 genomes]
rs73469790	1.00[AMR][1000 genomes]
rs73469802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471916	1.00[AMR][1000 genomes]
rs73471922	1.00[AMR][1000 genomes]
rs73471986	1.00[AMR][1000 genomes]
rs73471988	1.00[AMR][1000 genomes]
rs73471991	1.00[AMR][1000 genomes]
rs73471994	1.00[AMR][1000 genomes]
rs73471997	1.00[AMR][1000 genomes]
rs73472001	1.00[AMR][1000 genomes]
rs73487552	0.83[AFR][1000 genomes]
rs7808364	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533849	chr7:129462947-129616625	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129475000-129534800	Weak transcription	Colonic Mucosa	Colon
2	chr7:129477800-129498400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:129479400-129543600	Weak transcription	Thymus	Thymus
4	chr7:129481400-129499800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr7:129481400-129510000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:129484200-129498600	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:129484200-129503000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:129485400-129498600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr7:129485400-129503800	Weak transcription	Lung	lung
10	chr7:129485600-129502400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:129486400-129502400	Weak transcription	Esophagus	oesophagus
12	chr7:129486400-129505400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:129486600-129501400	Weak transcription	Right Ventricle	heart
14	chr7:129486800-129499200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr7:129487200-129502400	Weak transcription	Ovary	ovary
16	chr7:129488200-129499600	Weak transcription	Left Ventricle	heart
17	chr7:129491600-129510000	Weak transcription	Fetal Intestine Large	intestine
18	chr7:129491800-129502000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr7:129492000-129498800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr7:129492000-129499400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr7:129492000-129501200	Weak transcription	Stomach Mucosa	stomach
22	chr7:129492000-129509200	Weak transcription	Fetal Intestine Small	intestine
23	chr7:129492200-129499200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr7:129492200-129501800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr7:129492200-129502400	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr7:129492600-129502400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr7:129493000-129500800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr7:129493800-129498200	Weak transcription	Brain Substantia Nigra	brain
29	chr7:129493800-129499600	Weak transcription	Spleen	Spleen
30	chr7:129493800-129502400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr7:129493800-129502400	Weak transcription	HSMMtube	muscle
32	chr7:129493800-129510400	Weak transcription	Brain Germinal Matrix	brain
33	chr7:129494400-129498600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr7:129494400-129499400	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr7:129494400-129499800	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr7:129494400-129502200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr7:129494400-129502400	Weak transcription	Brain Angular Gyrus	brain
38	chr7:129494400-129502400	Weak transcription	Gastric	stomach
39	chr7:129494400-129518800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr7:129494600-129498600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr7:129494600-129499000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr7:129494800-129497800	Strong transcription	Primary T cells from cord blood	blood
43	chr7:129494800-129498600	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr7:129495000-129499200	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr7:129495000-129500600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr7:129495000-129502000	Weak transcription	Fetal Kidney	kidney
47	chr7:129495200-129498600	Weak transcription	Colon Smooth Muscle	Colon
48	chr7:129495200-129499200	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr7:129495400-129498000	Strong transcription	Primary B cells from peripheral blood	blood
50	chr7:129495400-129498600	Enhancers	Fetal Heart	heart

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