Variant report

Variant	rs61246488
Chromosome Location	chr3:99306260-99306261
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12108185	0.95[AFR][1000 genomes]
rs55727917	0.85[AFR][1000 genomes]
rs57238583	0.85[AFR][1000 genomes]
rs57817701	0.85[AFR][1000 genomes]
rs58068174	0.95[AFR][1000 genomes]
rs58821568	0.95[AFR][1000 genomes]
rs59434584	0.86[AFR][1000 genomes]
rs61226253	0.95[AFR][1000 genomes]
rs72928433	0.85[AFR][1000 genomes]
rs72928445	0.85[AFR][1000 genomes]
rs72928449	0.85[AFR][1000 genomes]
rs72928455	0.85[AFR][1000 genomes]
rs72928476	0.95[AFR][1000 genomes]
rs72932304	0.95[AFR][1000 genomes]
rs72932331	0.86[AFR][1000 genomes]
rs72932332	0.86[AFR][1000 genomes]
rs73858806	0.85[AFR][1000 genomes]
rs73858814	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99305200-99306800	Enhancers	Muscle Satellite Cultured Cells	--
2	chr3:99305400-99306800	Enhancers	HSMM	muscle
3	chr3:99306000-99306600	Enhancers	NHDF-Ad	bronchial
4	chr3:99306000-99306600	Enhancers	Osteobl	bone
5	chr3:99306200-99306400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:99306200-99307000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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