Variant report

Variant	rs73858806
Chromosome Location	chr3:99287535-99287536
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12108185	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28502493	1.00[AMR][1000 genomes]
rs55727917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55738753	1.00[AMR][1000 genomes]
rs55777512	1.00[AMR][1000 genomes]
rs56737522	1.00[AMR][1000 genomes]
rs57238583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57817701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58068174	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58821568	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59883625	1.00[AMR][1000 genomes]
rs61226253	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61246488	0.85[AFR][1000 genomes]
rs61438926	1.00[AMR][1000 genomes]
rs72926469	1.00[AMR][1000 genomes]
rs72926489	1.00[AMR][1000 genomes]
rs72926491	1.00[AMR][1000 genomes]
rs72928405	1.00[AMR][1000 genomes]
rs72928406	1.00[AMR][1000 genomes]
rs72928411	1.00[AMR][1000 genomes]
rs72928413	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928426	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928433	1.00[AFR][1000 genomes]
rs72928445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928476	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72932304	0.80[AFR][1000 genomes]
rs73858578	1.00[AMR][1000 genomes]
rs73858814	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99282800-99288000	Weak transcription	NH-A	brain
2	chr3:99283000-99293800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:99283400-99288000	Weak transcription	Osteobl	bone
4	chr3:99284800-99288600	Weak transcription	NHDF-Ad	bronchial
5	chr3:99285200-99287800	Weak transcription	HSMMtube	muscle
6	chr3:99286800-99289600	Enhancers	HSMM	muscle
7	chr3:99287200-99289600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr3:99287400-99288200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links