Variant report

Variant	rs61438926
Chromosome Location	chr3:99223328-99223329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12108185	1.00[AMR][1000 genomes]
rs28502493	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55727917	1.00[AMR][1000 genomes]
rs55738753	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55777512	1.00[AMR][1000 genomes]
rs56737522	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57238583	1.00[AMR][1000 genomes]
rs57817701	1.00[AMR][1000 genomes]
rs58068174	1.00[AMR][1000 genomes]
rs58821568	1.00[AMR][1000 genomes]
rs59883625	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61226253	1.00[AMR][1000 genomes]
rs72926469	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72926489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72926491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928405	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928411	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928413	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928426	1.00[AMR][1000 genomes]
rs72928445	1.00[AMR][1000 genomes]
rs72928449	1.00[AMR][1000 genomes]
rs72928455	1.00[AMR][1000 genomes]
rs72928476	1.00[AMR][1000 genomes]
rs73858578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73858806	1.00[AMR][1000 genomes]
rs73858814	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv3916	chr3:99186008-99232052	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99218800-99224000	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr3:99218800-99226200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:99219800-99224600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr3:99219800-99224800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:99219800-99225000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:99220000-99227000	Weak transcription	Aorta	Aorta
7	chr3:99220400-99226600	Weak transcription	Right Atrium	heart
8	chr3:99221200-99225000	Enhancers	Adipose Nuclei	Adipose
9	chr3:99221600-99225000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:99221600-99225000	Enhancers	NHDF-Ad	bronchial
11	chr3:99221600-99225200	Enhancers	Osteobl	bone
12	chr3:99221600-99225400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:99221600-99225400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr3:99221800-99223400	Enhancers	Colon Smooth Muscle	Colon
15	chr3:99221800-99223800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:99221800-99224200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr3:99221800-99224800	Enhancers	NHLF	lung
18	chr3:99221800-99225000	Enhancers	HSMM	muscle
19	chr3:99222000-99225000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:99222000-99225000	Enhancers	NH-A	brain
21	chr3:99222200-99223800	Enhancers	Ovary	ovary
22	chr3:99222400-99223800	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr3:99222600-99224600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:99222600-99224600	Weak transcription	NHEK	skin
25	chr3:99222600-99227000	Weak transcription	Left Ventricle	heart
26	chr3:99223000-99225000	Enhancers	HSMMtube	muscle
27	chr3:99223200-99223400	Enhancers	Lung	lung

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