Variant report

Variant	rs72926489
Chromosome Location	chr3:99243146-99243147
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12108185	1.00[AMR][1000 genomes]
rs28502493	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55727917	1.00[AMR][1000 genomes]
rs55738753	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55777512	1.00[AMR][1000 genomes]
rs56737522	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57238583	1.00[AMR][1000 genomes]
rs57817701	1.00[AMR][1000 genomes]
rs58068174	1.00[AMR][1000 genomes]
rs58821568	1.00[AMR][1000 genomes]
rs59883625	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61226253	1.00[AMR][1000 genomes]
rs61438926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72926469	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72926491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928405	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928411	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928413	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928426	1.00[AMR][1000 genomes]
rs72928445	1.00[AMR][1000 genomes]
rs72928449	1.00[AMR][1000 genomes]
rs72928455	1.00[AMR][1000 genomes]
rs72928476	1.00[AMR][1000 genomes]
rs73858578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73858806	1.00[AMR][1000 genomes]
rs73858814	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2572173	chr3:99242379-99245339	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
5	esv2354307	chr3:99243106-99245058	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
6	esv3462201	chr3:99243125-99244981	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99241800-99245800	Weak transcription	Fetal Heart	heart
2	chr3:99242000-99243400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:99242200-99243400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:99242400-99243400	Enhancers	NHDF-Ad	bronchial
5	chr3:99242600-99246000	Weak transcription	HSMMtube	muscle
6	chr3:99242600-99254000	Weak transcription	HUVEC	blood vessel
7	chr3:99243000-99243200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:99243000-99243200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:99243000-99243400	Enhancers	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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