Variant report

Variant	rs72928406
Chromosome Location	chr3:99254613-99254614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12108185	1.00[AMR][1000 genomes]
rs28502493	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55727917	1.00[AMR][1000 genomes]
rs55738753	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55777512	1.00[AMR][1000 genomes]
rs56737522	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57238583	1.00[AMR][1000 genomes]
rs57817701	1.00[AMR][1000 genomes]
rs58068174	1.00[AMR][1000 genomes]
rs58821568	1.00[AMR][1000 genomes]
rs59883625	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61226253	1.00[AMR][1000 genomes]
rs61438926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72926469	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72926489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72926491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928405	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928411	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928413	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928426	1.00[AMR][1000 genomes]
rs72928445	1.00[AMR][1000 genomes]
rs72928449	1.00[AMR][1000 genomes]
rs72928455	1.00[AMR][1000 genomes]
rs72928476	1.00[AMR][1000 genomes]
rs73858578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73858806	1.00[AMR][1000 genomes]
rs73858814	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99246600-99262000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:99249200-99256000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:99251400-99256200	Weak transcription	Aorta	Aorta
4	chr3:99253200-99256000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:99253400-99256400	Enhancers	HSMM	muscle
6	chr3:99253600-99255000	Enhancers	Fetal Lung	lung
7	chr3:99253600-99255600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:99253600-99255600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:99253600-99256400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:99253600-99256400	Enhancers	NHEK	skin
11	chr3:99254000-99254800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:99254000-99255000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:99254000-99255000	Enhancers	HSMMtube	muscle
14	chr3:99254000-99255000	Enhancers	NH-A	brain
15	chr3:99254000-99255200	Enhancers	HMEC	breast
16	chr3:99254000-99256000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:99254000-99256000	Enhancers	Osteobl	bone
18	chr3:99254000-99256800	Enhancers	NHDF-Ad	bronchial
19	chr3:99254200-99254800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:99254200-99255000	Enhancers	Hela-S3	cervix
21	chr3:99254200-99255600	Enhancers	NHLF	lung
22	chr3:99254200-99255800	Enhancers	Fetal Stomach	stomach
23	chr3:99254200-99256000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:99254400-99254800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:99254400-99255200	Enhancers	Adipose Nuclei	Adipose
26	chr3:99254400-99256600	Enhancers	Muscle Satellite Cultured Cells	--
27	chr3:99254600-99255600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr3:99254600-99256000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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