Variant report

Variant	rs72928413
Chromosome Location	chr3:99261851-99261852
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12108185	1.00[AMR][1000 genomes]
rs28502493	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55727917	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55738753	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55777512	1.00[AMR][1000 genomes]
rs56737522	1.00[AMR][1000 genomes]
rs57238583	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57817701	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58068174	1.00[AMR][1000 genomes]
rs58821568	1.00[AMR][1000 genomes]
rs59883625	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61226253	1.00[AMR][1000 genomes]
rs61438926	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72926469	1.00[AMR][1000 genomes]
rs72926489	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72926491	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928405	1.00[AMR][1000 genomes]
rs72928406	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928411	1.00[AMR][1000 genomes]
rs72928426	1.00[AMR][1000 genomes]
rs72928433	0.85[AFR][1000 genomes]
rs72928445	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928449	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928455	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928476	1.00[AMR][1000 genomes]
rs73858578	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73858806	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73858814	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99246600-99262000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:99255600-99262000	Weak transcription	NHLF	lung
3	chr3:99256600-99263800	Weak transcription	Aorta	Aorta
4	chr3:99256800-99262000	Weak transcription	NHDF-Ad	bronchial
5	chr3:99260800-99264600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:99260800-99264800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:99261200-99264800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:99261200-99265600	Enhancers	Hela-S3	cervix
9	chr3:99261400-99264400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr3:99261400-99264400	Enhancers	HMEC	breast
11	chr3:99261600-99262000	Weak transcription	NH-A	brain
12	chr3:99261600-99262400	Flanking Active TSS	HUVEC	blood vessel
13	chr3:99261600-99265600	Enhancers	HSMM	muscle
14	chr3:99261800-99262000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr3:99261800-99262000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr3:99261800-99262200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr3:99261800-99262200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr3:99261800-99262200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr3:99261800-99262200	Flanking Active TSS	NHEK	skin
20	chr3:99261800-99262400	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr3:99261800-99262400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr3:99261800-99262600	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr3:99261800-99262600	Enhancers	Placenta	Placenta
24	chr3:99261800-99263000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr3:99261800-99263000	Enhancers	Spleen	Spleen
26	chr3:99261800-99264000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr3:99261800-99264400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr3:99261800-99264400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr3:99261800-99264400	Enhancers	Osteobl	bone
30	chr3:99261800-99264600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr3:99261800-99264600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr3:99261800-99264600	Enhancers	Adipose Nuclei	Adipose
33	chr3:99261800-99264800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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