Variant report

Variant	rs72928411
Chromosome Location	chr3:99260758-99260759
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12108185	1.00[AMR][1000 genomes]
rs28502493	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55727917	1.00[AMR][1000 genomes]
rs55738753	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55777512	1.00[AMR][1000 genomes]
rs56737522	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57238583	1.00[AMR][1000 genomes]
rs57817701	1.00[AMR][1000 genomes]
rs58068174	1.00[AMR][1000 genomes]
rs58821568	1.00[AMR][1000 genomes]
rs59883625	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61226253	1.00[AMR][1000 genomes]
rs61438926	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72926469	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72926489	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72926491	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928405	1.00[AMR][1000 genomes]
rs72928406	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928413	1.00[AMR][1000 genomes]
rs72928426	1.00[AMR][1000 genomes]
rs72928445	1.00[AMR][1000 genomes]
rs72928449	1.00[AMR][1000 genomes]
rs72928455	1.00[AMR][1000 genomes]
rs72928476	1.00[AMR][1000 genomes]
rs73858578	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73858806	1.00[AMR][1000 genomes]
rs73858814	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99246600-99262000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:99255200-99261400	Weak transcription	HMEC	breast
3	chr3:99255600-99262000	Weak transcription	NHLF	lung
4	chr3:99256000-99261200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:99256400-99261800	Weak transcription	Placenta	Placenta
6	chr3:99256600-99261400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr3:99256600-99261800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:99256600-99261800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:99256600-99261800	Weak transcription	Adipose Nuclei	Adipose
10	chr3:99256600-99263800	Weak transcription	Aorta	Aorta
11	chr3:99256800-99261800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:99256800-99261800	Weak transcription	Osteobl	bone
13	chr3:99256800-99262000	Weak transcription	NHDF-Ad	bronchial
14	chr3:99258600-99261800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr3:99259800-99261800	Enhancers	NHEK	skin
16	chr3:99260400-99260800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:99260400-99260800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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