Variant report

Variant	rs72928405
Chromosome Location	chr3:99253386-99253387
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12108185	1.00[AMR][1000 genomes]
rs28502493	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55727917	1.00[AMR][1000 genomes]
rs55738753	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55777512	1.00[AMR][1000 genomes]
rs56737522	1.00[AMR][1000 genomes]
rs57238583	1.00[AMR][1000 genomes]
rs57817701	1.00[AMR][1000 genomes]
rs58068174	1.00[AMR][1000 genomes]
rs58821568	1.00[AMR][1000 genomes]
rs59883625	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61226253	1.00[AMR][1000 genomes]
rs61438926	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72926469	1.00[AMR][1000 genomes]
rs72926489	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72926491	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928406	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928411	1.00[AMR][1000 genomes]
rs72928413	1.00[AMR][1000 genomes]
rs72928426	1.00[AMR][1000 genomes]
rs72928445	1.00[AMR][1000 genomes]
rs72928449	1.00[AMR][1000 genomes]
rs72928455	1.00[AMR][1000 genomes]
rs72928476	1.00[AMR][1000 genomes]
rs73858578	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73858806	1.00[AMR][1000 genomes]
rs73858814	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99242600-99254000	Weak transcription	HUVEC	blood vessel
2	chr3:99246200-99254200	Weak transcription	NHLF	lung
3	chr3:99246600-99262000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:99248800-99253600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:99249000-99254200	Weak transcription	Hela-S3	cervix
6	chr3:99249200-99254200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:99249200-99254600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:99249200-99256000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr3:99251000-99253600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:99251400-99253600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:99251400-99254000	Weak transcription	NHDF-Ad	bronchial
12	chr3:99251400-99256200	Weak transcription	Aorta	Aorta
13	chr3:99251600-99254000	Weak transcription	Osteobl	bone
14	chr3:99251600-99254400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:99253000-99253600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr3:99253200-99254000	Enhancers	Adipose Nuclei	Adipose
17	chr3:99253200-99256000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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