Variant report
| Variant | rs58068174 |
|---|---|
| Chromosome Location | chr3:99293713-99293714 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:99279758..99281912-chr3:99291680..99293883,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs12108185 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28502493 | 1.00[AMR][1000 genomes] |
| rs55727917 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs55738753 | 1.00[AMR][1000 genomes] |
| rs55777512 | 1.00[AMR][1000 genomes] |
| rs56737522 | 1.00[AMR][1000 genomes] |
| rs57238583 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57817701 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58488737 | 0.84[AFR][1000 genomes] |
| rs58821568 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59434584 | 0.82[AFR][1000 genomes] |
| rs59883625 | 1.00[AMR][1000 genomes] |
| rs61226253 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61246488 | 0.95[AFR][1000 genomes] |
| rs61438926 | 1.00[AMR][1000 genomes] |
| rs72926469 | 1.00[AMR][1000 genomes] |
| rs72926489 | 1.00[AMR][1000 genomes] |
| rs72926491 | 1.00[AMR][1000 genomes] |
| rs72928405 | 1.00[AMR][1000 genomes] |
| rs72928406 | 1.00[AMR][1000 genomes] |
| rs72928411 | 1.00[AMR][1000 genomes] |
| rs72928413 | 1.00[AMR][1000 genomes] |
| rs72928426 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72928433 | 0.89[AFR][1000 genomes] |
| rs72928445 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72928449 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72928455 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72928476 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72932304 | 0.90[AFR][1000 genomes] |
| rs72932331 | 0.82[AFR][1000 genomes] |
| rs72932332 | 0.82[AFR][1000 genomes] |
| rs73858578 | 1.00[AMR][1000 genomes] |
| rs73858806 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73858814 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530026 | chr3:98837320-99340537 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | esv3422853 | chr3:99208019-99342748 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:99283000-99293800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
