Variant report

Variant	rs72928476
Chromosome Location	chr3:99291105-99291106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12108185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28502493	1.00[AMR][1000 genomes]
rs55727917	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55738753	1.00[AMR][1000 genomes]
rs55777512	1.00[AMR][1000 genomes]
rs56737522	1.00[AMR][1000 genomes]
rs57238583	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57817701	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58068174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58488737	0.84[AFR][1000 genomes]
rs58821568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59434584	0.82[AFR][1000 genomes]
rs59883625	1.00[AMR][1000 genomes]
rs61226253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61246488	0.95[AFR][1000 genomes]
rs61438926	1.00[AMR][1000 genomes]
rs72926469	1.00[AMR][1000 genomes]
rs72926489	1.00[AMR][1000 genomes]
rs72926491	1.00[AMR][1000 genomes]
rs72928405	1.00[AMR][1000 genomes]
rs72928406	1.00[AMR][1000 genomes]
rs72928411	1.00[AMR][1000 genomes]
rs72928413	1.00[AMR][1000 genomes]
rs72928426	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928433	0.89[AFR][1000 genomes]
rs72928445	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928449	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72928455	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72932304	0.90[AFR][1000 genomes]
rs72932331	0.82[AFR][1000 genomes]
rs72932332	0.82[AFR][1000 genomes]
rs73858578	1.00[AMR][1000 genomes]
rs73858806	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73858814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99283000-99293800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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