Variant report

Variant	rs61253581
Chromosome Location	chr17:38019214-38019215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38016155..38020243-chr17:38021178..38026655,8	K562	blood:
2	chr17:38016485..38022109-chr17:38022345..38027890,7	K562	blood:
3	chr17:37893210..37895843-chr17:38018530..38020744,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000141738	Chromatin interaction
ENSG00000186075	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16965360	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35829084	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61744726	1.00[AMR][1000 genomes]
rs7212976	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7213118	1.00[AMR][1000 genomes]
rs7215617	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7220943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv1795575	chr17:37974075-38041762	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38017000-38020200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
2	chr17:38017400-38020000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
3	chr17:38017400-38021000	Active TSS	Primary T killer memory cells from peripheral blood	blood
4	chr17:38017800-38019800	Active TSS	Fetal Thymus	thymus
5	chr17:38017800-38020000	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
6	chr17:38017800-38020600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
7	chr17:38017800-38020800	Active TSS	Primary B cells from cord blood	blood
8	chr17:38017800-38021000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
9	chr17:38017800-38021400	Active TSS	Primary B cells from peripheral blood	blood
10	chr17:38017800-38021400	Active TSS	Primary T cells fromperipheralblood	blood
11	chr17:38017800-38021400	Active TSS	GM12878-XiMat	blood
12	chr17:38018000-38019600	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
13	chr17:38018000-38019600	Weak transcription	Thymus	Thymus
14	chr17:38018000-38019800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr17:38018000-38021000	Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr17:38018000-38021000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
17	chr17:38018200-38021000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
18	chr17:38018400-38019400	Flanking Active TSS	Primary T cells from cord blood	blood
19	chr17:38018400-38019800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
20	chr17:38018600-38019400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
21	chr17:38019000-38020000	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
22	chr17:38019200-38020800	Active TSS	Primary T helper naive cells from peripheral blood	blood
23	chr17:38019200-38021000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
24	chr17:38019200-38021000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links