Variant report

Variant	rs7213118
Chromosome Location	chr17:37969211-37969212
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:37964384..37967341-chr17:37969049..37971628,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16965360	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35829084	1.00[AMR][1000 genomes]
rs61253581	1.00[AMR][1000 genomes]
rs61744726	1.00[AMR][1000 genomes]
rs7212976	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7215617	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7220943	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37951600-37969800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr17:37964000-37969600	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr17:37965400-37969800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr17:37965800-37970000	Weak transcription	Fetal Lung	lung
5	chr17:37966800-37969600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr17:37966800-37969600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr17:37966800-37974000	Strong transcription	GM12878-XiMat	blood
8	chr17:37967000-37969600	Strong transcription	Primary B cells from cord blood	blood
9	chr17:37967200-37969600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr17:37967200-37969800	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr17:37967200-37969800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr17:37967400-37969800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr17:37967600-37969800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr17:37968200-37969600	Enhancers	Primary T cells from cord blood	blood
15	chr17:37968200-37969600	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr17:37968200-37969600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr17:37968200-37969800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr17:37968200-37971400	Genic enhancers	Primary B cells from peripheral blood	blood
19	chr17:37968600-37970000	Enhancers	Fetal Thymus	thymus
20	chr17:37968800-37970000	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr17:37968800-37970600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr17:37968800-37971000	Enhancers	Dnd41	blood
23	chr17:37969000-37969400	Weak transcription	Thymus	Thymus
24	chr17:37969000-37969600	Enhancers	Primary T cells fromperipheralblood	blood
25	chr17:37969000-37970800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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