Variant report

Variant	rs61279408
Chromosome Location	chr7:119896809-119896810
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs56230684	0.91[AFR][1000 genomes]
rs57407887	1.00[AFR][1000 genomes]
rs6968078	0.92[AFR][1000 genomes]
rs73722538	1.00[AFR][1000 genomes]
rs73722544	0.91[AFR][1000 genomes]
rs73722545	0.91[AFR][1000 genomes]
rs73722547	0.91[AFR][1000 genomes]
rs73722556	0.91[AFR][1000 genomes]
rs73722557	0.91[AFR][1000 genomes]
rs73722559	0.91[AFR][1000 genomes]
rs73722560	0.91[AFR][1000 genomes]
rs73722562	0.91[AFR][1000 genomes]
rs73722563	0.91[AFR][1000 genomes]
rs73722565	0.91[AFR][1000 genomes]
rs73722566	0.91[AFR][1000 genomes]
rs73722567	0.91[AFR][1000 genomes]
rs73722572	0.91[AFR][1000 genomes]
rs73722575	0.91[AFR][1000 genomes]
rs73722576	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119896200-119897200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:119896400-119898200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
3	chr7:119896800-119898200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr7:119896800-119898400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links