Variant report

Variant	rs73722545
Chromosome Location	chr7:119919173-119919174
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs56230684	1.00[AFR][1000 genomes]
rs57407887	0.91[AFR][1000 genomes]
rs61279408	0.91[AFR][1000 genomes]
rs6968078	0.84[AFR][1000 genomes]
rs73722538	0.91[AFR][1000 genomes]
rs73722544	1.00[AFR][1000 genomes]
rs73722547	1.00[AFR][1000 genomes]
rs73722556	1.00[AFR][1000 genomes]
rs73722557	1.00[AFR][1000 genomes]
rs73722559	1.00[AFR][1000 genomes]
rs73722560	1.00[AFR][1000 genomes]
rs73722562	1.00[AFR][1000 genomes]
rs73722563	1.00[AFR][1000 genomes]
rs73722565	1.00[AFR][1000 genomes]
rs73722566	1.00[AFR][1000 genomes]
rs73722567	1.00[AFR][1000 genomes]
rs73722572	1.00[AFR][1000 genomes]
rs73722575	1.00[AFR][1000 genomes]
rs73722576	1.00[AFR][1000 genomes]
rs73722577	0.82[AFR][1000 genomes]
rs73722589	0.82[AFR][1000 genomes]
rs73722595	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1843078	chr7:119909603-119934006	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119914600-119920200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:119914600-119921000	Weak transcription	Ovary	ovary
3	chr7:119915600-119919200	Active TSS	Brain Anterior Caudate	brain
4	chr7:119916000-119920000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:119916200-119922400	Active TSS	GM12878-XiMat	blood
6	chr7:119918200-119919200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr7:119918200-119919200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr7:119918200-119919400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr7:119918400-119919400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:119918600-119919400	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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