Variant report
| Variant | rs56230684 |
|---|---|
| Chromosome Location | chr7:119941052-119941053 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs57407887 | 0.91[AFR][1000 genomes] |
| rs61279408 | 0.91[AFR][1000 genomes] |
| rs6968078 | 0.84[AFR][1000 genomes] |
| rs73722538 | 0.91[AFR][1000 genomes] |
| rs73722544 | 1.00[AFR][1000 genomes] |
| rs73722545 | 1.00[AFR][1000 genomes] |
| rs73722547 | 1.00[AFR][1000 genomes] |
| rs73722556 | 1.00[AFR][1000 genomes] |
| rs73722557 | 1.00[AFR][1000 genomes] |
| rs73722559 | 1.00[AFR][1000 genomes] |
| rs73722560 | 1.00[AFR][1000 genomes] |
| rs73722562 | 1.00[AFR][1000 genomes] |
| rs73722563 | 1.00[AFR][1000 genomes] |
| rs73722565 | 1.00[AFR][1000 genomes] |
| rs73722566 | 1.00[AFR][1000 genomes] |
| rs73722567 | 1.00[AFR][1000 genomes] |
| rs73722572 | 1.00[AFR][1000 genomes] |
| rs73722575 | 1.00[AFR][1000 genomes] |
| rs73722576 | 1.00[AFR][1000 genomes] |
| rs73722577 | 0.82[AFR][1000 genomes] |
| rs73722589 | 0.82[AFR][1000 genomes] |
| rs73722595 | 0.82[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv608326 | chr7:119828331-119995890 | Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:119939400-119995600 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
