Variant report
| Variant | rs73722589 |
|---|---|
| Chromosome Location | chr7:120028006-120028007 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:120020344..120022950-chr7:120023648..120028182,4 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs56230684 | 0.82[AFR][1000 genomes] |
| rs56679785 | 0.84[AFR][1000 genomes] |
| rs73722544 | 0.82[AFR][1000 genomes] |
| rs73722545 | 0.82[AFR][1000 genomes] |
| rs73722547 | 0.82[AFR][1000 genomes] |
| rs73722556 | 0.82[AFR][1000 genomes] |
| rs73722557 | 0.82[AFR][1000 genomes] |
| rs73722559 | 0.82[AFR][1000 genomes] |
| rs73722560 | 0.82[AFR][1000 genomes] |
| rs73722562 | 0.82[AFR][1000 genomes] |
| rs73722563 | 0.82[AFR][1000 genomes] |
| rs73722565 | 0.82[AFR][1000 genomes] |
| rs73722566 | 0.82[AFR][1000 genomes] |
| rs73722567 | 0.82[AFR][1000 genomes] |
| rs73722572 | 0.82[AFR][1000 genomes] |
| rs73722575 | 0.82[AFR][1000 genomes] |
| rs73722576 | 0.82[AFR][1000 genomes] |
| rs73722577 | 0.82[AFR][1000 genomes] |
| rs73722585 | 0.84[AFR][1000 genomes] |
| rs73722586 | 0.91[AFR][1000 genomes] |
| rs73722588 | 0.84[AFR][1000 genomes] |
| rs73722593 | 0.84[AFR][1000 genomes] |
| rs73722595 | 1.00[AFR][1000 genomes] |
| rs73722600 | 0.84[AFR][1000 genomes] |
| rs73722602 | 0.84[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024920 | chr7:120002420-120083753 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv516686 | chr7:120015843-120223084 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv1026821 | chr7:120020317-120190437 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:120024800-120028800 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
