Variant report

Variant	rs73722567
Chromosome Location	chr7:119960421-119960422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs56230684	1.00[AFR][1000 genomes]
rs57407887	0.91[AFR][1000 genomes]
rs61279408	0.91[AFR][1000 genomes]
rs6968078	0.84[AFR][1000 genomes]
rs73722538	0.91[AFR][1000 genomes]
rs73722544	1.00[AFR][1000 genomes]
rs73722545	1.00[AFR][1000 genomes]
rs73722547	1.00[AFR][1000 genomes]
rs73722556	1.00[AFR][1000 genomes]
rs73722557	1.00[AFR][1000 genomes]
rs73722559	1.00[AFR][1000 genomes]
rs73722560	1.00[AFR][1000 genomes]
rs73722562	1.00[AFR][1000 genomes]
rs73722563	1.00[AFR][1000 genomes]
rs73722565	1.00[AFR][1000 genomes]
rs73722566	1.00[AFR][1000 genomes]
rs73722572	1.00[AFR][1000 genomes]
rs73722575	1.00[AFR][1000 genomes]
rs73722576	1.00[AFR][1000 genomes]
rs73722577	0.82[AFR][1000 genomes]
rs73722589	0.82[AFR][1000 genomes]
rs73722595	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119939400-119995600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:119960400-119961000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:119960400-119961000	Active TSS	Brain Substantia Nigra	brain
4	chr7:119960400-119961400	Enhancers	HUVEC	blood vessel
5	chr7:119960400-119962000	ZNF genes & repeats	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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