Variant report

Variant	rs61409017
Chromosome Location	chr15:55559868-55559869
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:55558293..55561051-chr15:55570591..55574257,3	K562	blood:
2	chr15:55531824..55533387-chr15:55558858..55561281,2	K562	blood:
3	chr15:55531824..55534011-chr15:55559781..55562269,2	K562	blood:
4	chr15:55557767..55561627-chr15:55569250..55572425,4	K562	blood:
5	chr15:55545838..55548100-chr15:55559043..55560883,2	K562	blood:
6	chr15:55559026..55561608-chr15:55564139..55565881,2	K562	blood:
7	chr15:55529177..55531366-chr15:55559639..55562184,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56810972	1.00[EUR][1000 genomes]
rs57576913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60023202	1.00[AMR][1000 genomes]
rs8025548	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043176	chr15:55010228-55563000	Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1042741	chr15:55068022-55622497	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv917323	chr15:55290499-56041334	Genic enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
4	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv1036924	chr15:55527874-55616480	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1051046	chr15:55529291-55821973	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
7	nsv569522	chr15:55532211-55611126	Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv904241	chr15:55534342-55611126	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv1036173	chr15:55547689-55812194	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
10	nsv542391	chr15:55547689-55812194	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
11	nsv904242	chr15:55550755-55611126	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
12	nsv569523	chr15:55555602-55836704	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
13	nsv569524	chr15:55558624-55612511	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55490000-55562800	Weak transcription	Ovary	ovary
2	chr15:55514800-55560400	Weak transcription	Spleen	Spleen
3	chr15:55520800-55574800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr15:55540600-55561200	Weak transcription	Esophagus	oesophagus
5	chr15:55542400-55581000	Weak transcription	Fetal Intestine Small	intestine
6	chr15:55545200-55561000	Weak transcription	Lung	lung
7	chr15:55547800-55571400	Weak transcription	Aorta	Aorta
8	chr15:55548400-55560200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr15:55548600-55574800	Weak transcription	Left Ventricle	heart
10	chr15:55549200-55571600	Weak transcription	HMEC	breast
11	chr15:55550000-55571400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr15:55551000-55561200	Weak transcription	Fetal Kidney	kidney
13	chr15:55553200-55581000	Weak transcription	Fetal Intestine Large	intestine
14	chr15:55555600-55560000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:55557600-55561600	Strong transcription	Liver	Liver
16	chr15:55559000-55560000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
17	chr15:55559000-55560400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
18	chr15:55559000-55560600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
19	chr15:55559000-55560600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr15:55559000-55560800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
21	chr15:55559000-55560800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr15:55559200-55560200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:55559200-55560200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr15:55559200-55560200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr15:55559200-55560200	Enhancers	Fetal Lung	lung
26	chr15:55559200-55560200	Enhancers	Hela-S3	cervix
27	chr15:55559200-55560400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
28	chr15:55559200-55560400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr15:55559200-55560400	Enhancers	GM12878-XiMat	blood
30	chr15:55559200-55560600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr15:55559200-55560600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
32	chr15:55559200-55560800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr15:55559200-55561400	Enhancers	Pancreas	Pancrea
34	chr15:55559400-55560000	Flanking Active TSS	K562	blood
35	chr15:55559400-55560000	Flanking Active TSS	NH-A	brain
36	chr15:55559400-55560200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr15:55559400-55560200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
38	chr15:55559400-55560200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr15:55559400-55560200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr15:55559400-55560200	Enhancers	NHDF-Ad	bronchial
41	chr15:55559400-55560400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr15:55559400-55560400	Flanking Active TSS	Primary B cells from cord blood	blood
43	chr15:55559400-55560400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
44	chr15:55559400-55560400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
45	chr15:55559400-55560600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr15:55559400-55560600	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr15:55559400-55560600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
48	chr15:55559600-55560000	Flanking Active TSS	Primary B cells from peripheral blood	blood
49	chr15:55559600-55560000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
50	chr15:55559600-55560000	Enhancers	Colon Smooth Muscle	Colon

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