Variant report

Variant	rs61479181
Chromosome Location	chr2:231486925-231486926
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13412316	1.00[AMR][1000 genomes]
rs4072492	1.00[EUR][1000 genomes]
rs4072493	1.00[EUR][1000 genomes]
rs4072494	1.00[EUR][1000 genomes]
rs4072495	1.00[EUR][1000 genomes]
rs4994158	1.00[EUR][1000 genomes]
rs55813008	1.00[EUR][1000 genomes]
rs59447445	1.00[EUR][1000 genomes]
rs59448537	1.00[EUR][1000 genomes]
rs6436961	1.00[EUR][1000 genomes]
rs6436962	1.00[EUR][1000 genomes]
rs73103326	1.00[EUR][1000 genomes]
rs73103330	1.00[EUR][1000 genomes]
rs73103367	1.00[EUR][1000 genomes]
rs73105249	1.00[AMR][1000 genomes]
rs73106851	1.00[EUR][1000 genomes]
rs73108724	1.00[EUR][1000 genomes]
rs73992491	1.00[EUR][1000 genomes]
rs7572545	1.00[EUR][1000 genomes]
rs7586488	1.00[EUR][1000 genomes]
rs7604318	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875955	chr2:231440555-231500805	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231472800-231497200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:231481800-231493000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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