Variant report

Variant	rs73106851
Chromosome Location	chr2:231458913-231458914
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs4072492	1.00[EUR][1000 genomes]
rs4072493	1.00[EUR][1000 genomes]
rs4072494	1.00[EUR][1000 genomes]
rs4072495	1.00[EUR][1000 genomes]
rs4994158	1.00[EUR][1000 genomes]
rs55813008	1.00[EUR][1000 genomes]
rs58982039	1.00[AMR][1000 genomes]
rs59447445	1.00[EUR][1000 genomes]
rs59448537	1.00[EUR][1000 genomes]
rs61479181	1.00[EUR][1000 genomes]
rs6436961	1.00[EUR][1000 genomes]
rs6436962	1.00[EUR][1000 genomes]
rs73101055	1.00[AMR][1000 genomes]
rs73103326	1.00[EUR][1000 genomes]
rs73103330	1.00[EUR][1000 genomes]
rs73103367	1.00[EUR][1000 genomes]
rs73108724	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73992491	1.00[EUR][1000 genomes]
rs7572545	1.00[EUR][1000 genomes]
rs7586488	1.00[EUR][1000 genomes]
rs7604318	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv18000	chr2:231072978-231467847	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv875955	chr2:231440555-231500805	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231453600-231461400	Enhancers	Primary B cells from peripheral blood	blood
2	chr2:231454400-231459600	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr2:231456000-231459400	Enhancers	Primary T cells fromperipheralblood	blood
4	chr2:231456000-231459600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr2:231456400-231459000	Enhancers	Fetal Thymus	thymus
6	chr2:231456400-231459400	Enhancers	Primary T cells from cord blood	blood
7	chr2:231456400-231459400	Enhancers	Dnd41	blood
8	chr2:231456600-231459200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr2:231456800-231459000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:231457000-231465800	Weak transcription	Thymus	Thymus
11	chr2:231457600-231462000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr2:231457800-231459000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr2:231457800-231459600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr2:231457800-231463000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr2:231457800-231464600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr2:231458000-231463000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr2:231458600-231459200	Enhancers	Spleen	Spleen
18	chr2:231458600-231459600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr2:231458800-231459000	Enhancers	GM12878-XiMat	blood
20	chr2:231458800-231459200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
21	chr2:231458800-231459800	Enhancers	Primary B cells from cord blood	blood

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