Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs4072492	1.00[EUR][1000 genomes]
rs4072493	1.00[EUR][1000 genomes]
rs4072494	1.00[EUR][1000 genomes]
rs4072495	1.00[EUR][1000 genomes]
rs4994158	1.00[EUR][1000 genomes]
rs55813008	1.00[EUR][1000 genomes]
rs58982039	1.00[AMR][1000 genomes]
rs59447445	1.00[EUR][1000 genomes]
rs59448537	1.00[EUR][1000 genomes]
rs61479181	1.00[EUR][1000 genomes]
rs6436961	1.00[EUR][1000 genomes]
rs6436962	1.00[EUR][1000 genomes]
rs73101055	1.00[AMR][1000 genomes]
rs73103326	1.00[EUR][1000 genomes]
rs73103330	1.00[EUR][1000 genomes]
rs73103367	1.00[EUR][1000 genomes]
rs73106851	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73992491	1.00[EUR][1000 genomes]
rs7572545	1.00[EUR][1000 genomes]
rs7586488	1.00[EUR][1000 genomes]
rs7604318	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875955	chr2:231440555-231500805	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231470200-231475800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr2:231472800-231497200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:231474800-231475800	Enhancers	Primary B cells from peripheral blood	blood
4	chr2:231474800-231475800	Enhancers	GM12878-XiMat	blood
5	chr2:231475000-231475800	Enhancers	Primary B cells from cord blood	blood
6	chr2:231475000-231476800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr2:231475000-231476800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr2:231475000-231477000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr2:231475000-231477000	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr2:231475200-231475600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr2:231475200-231476800	Enhancers	Primary T cells fromperipheralblood	blood
12	chr2:231475200-231476800	Enhancers	Primary T helper cells fromperipheralblood	blood

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