Variant report

Variant	rs61532090
Chromosome Location	chr15:58522513-58522514
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs59413009	1.00[EUR][1000 genomes]
rs7166124	1.00[AMR][1000 genomes]
rs7180471	1.00[EUR][1000 genomes]
rs7181756	1.00[EUR][1000 genomes]
rs8028651	1.00[EUR][1000 genomes]
rs9888642	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1050473	chr15:58479888-58562270	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv904264	chr15:58505122-58588510	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv904265	chr15:58517528-58588510	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58519200-58522600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr15:58520200-58522600	Enhancers	HSMMtube	muscle
3	chr15:58520200-58523400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:58520200-58523400	Enhancers	NHEK	skin
5	chr15:58520400-58522600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:58520400-58522600	Enhancers	NHLF	lung
7	chr15:58520400-58522800	Enhancers	Psoas Muscle	Psoas
8	chr15:58520400-58523200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr15:58520400-58523200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:58520400-58523200	Enhancers	Left Ventricle	heart
11	chr15:58520400-58523200	Enhancers	Right Atrium	heart
12	chr15:58520400-58523600	Enhancers	HMEC	breast
13	chr15:58520600-58522600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:58520600-58523200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr15:58520600-58523400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:58521200-58522600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr15:58521200-58522600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:58521200-58522600	Weak transcription	Fetal Muscle Trunk	muscle
19	chr15:58521200-58523200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:58521200-58524400	Weak transcription	Pancreas	Pancrea
21	chr15:58521400-58523200	Enhancers	Fetal Heart	heart
22	chr15:58521400-58525400	Weak transcription	Hela-S3	cervix
23	chr15:58521400-58534200	Weak transcription	Liver	Liver
24	chr15:58521600-58522600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr15:58521600-58524000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr15:58521800-58523400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr15:58522000-58522800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr15:58522000-58522800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr15:58522000-58523200	Enhancers	H9 Cell Line	embryonic stem cell
30	chr15:58522000-58523200	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr15:58522000-58523200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr15:58522000-58523200	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr15:58522000-58525600	Weak transcription	A549	lung
34	chr15:58522200-58522600	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr15:58522200-58522600	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr15:58522200-58522600	Weak transcription	Fetal Thymus	thymus
37	chr15:58522200-58522800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr15:58522200-58523200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr15:58522200-58523400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr15:58522200-58523600	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr15:58522200-58523600	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr15:58522200-58523600	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr15:58522400-58522600	Flanking Active TSS	Brain Cingulate Gyrus	brain
44	chr15:58522400-58522600	Enhancers	Brain Hippocampus Middle	brain
45	chr15:58522400-58522800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr15:58522400-58523000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
47	chr15:58522400-58523000	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr15:58522400-58523200	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr15:58522400-58523200	Enhancers	Brain Angular Gyrus	brain
50	chr15:58522400-58523200	Enhancers	Brain Anterior Caudate	brain

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