Variant report

Variant	rs61546089
Chromosome Location	chr6:81168272-81168273
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs58231181	1.00[EUR][1000 genomes]
rs58621476	1.00[EUR][1000 genomes]
rs61109906	1.00[EUR][1000 genomes]
rs61477549	1.00[EUR][1000 genomes]
rs73748800	1.00[EUR][1000 genomes]
rs73751649	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs806842	1.00[EUR][1000 genomes]
rs9448918	1.00[EUR][1000 genomes]
rs9448921	1.00[EUR][1000 genomes]
rs9448922	1.00[EUR][1000 genomes]
rs9448927	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1018028	chr6:81138011-81201697	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1019932	chr6:81155458-81217868	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv886311	chr6:81166178-81239971	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81162800-81168400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:81162800-81168400	Enhancers	HMEC	breast
3	chr6:81163000-81179800	Weak transcription	Right Ventricle	heart
4	chr6:81163200-81169800	Weak transcription	Fetal Heart	heart
5	chr6:81163400-81168400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:81166200-81168400	Enhancers	NHEK	skin
7	chr6:81166200-81168400	Enhancers	NHLF	lung
8	chr6:81166400-81168400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:81166400-81168400	Enhancers	NHDF-Ad	bronchial
10	chr6:81166600-81168400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr6:81166600-81168400	Enhancers	Fetal Stomach	stomach
12	chr6:81166800-81168400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:81166800-81168400	Enhancers	Brain Anterior Caudate	brain
14	chr6:81166800-81168400	Enhancers	Placenta Amnion	Placenta Amnion
15	chr6:81166800-81168400	Enhancers	NH-A	brain
16	chr6:81167200-81168400	Enhancers	Fetal Lung	lung
17	chr6:81167600-81168400	Enhancers	HUVEC	blood vessel
18	chr6:81167600-81170200	Weak transcription	HSMMtube	muscle
19	chr6:81167600-81175000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:81167600-81181400	Weak transcription	Ovary	ovary
21	chr6:81167600-81184800	Weak transcription	Pancreas	Pancrea
22	chr6:81167800-81168600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:81167800-81170000	Weak transcription	Hela-S3	cervix
24	chr6:81167800-81176200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr6:81168000-81170000	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr6:81168000-81170000	Weak transcription	Osteobl	bone
27	chr6:81168200-81169800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:81168200-81170200	Weak transcription	HSMM	muscle
29	chr6:81168200-81172800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:81168200-81187000	Weak transcription	Rectal Smooth Muscle	rectum

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