Variant report

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10943700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16891543	1.00[EUR][1000 genomes]
rs16891547	1.00[EUR][1000 genomes]
rs2082998	0.81[AFR][1000 genomes]
rs2322764	1.00[AMR][1000 genomes]
rs2490233	1.00[EUR][1000 genomes]
rs2490237	1.00[EUR][1000 genomes]
rs2490238	1.00[EUR][1000 genomes]
rs2490242	1.00[EUR][1000 genomes]
rs2490246	1.00[EUR][1000 genomes]
rs2490247	1.00[EUR][1000 genomes]
rs2505931	1.00[EUR][1000 genomes]
rs2505933	1.00[EUR][1000 genomes]
rs2505934	1.00[EUR][1000 genomes]
rs2505936	1.00[EUR][1000 genomes]
rs2505938	1.00[EUR][1000 genomes]
rs2505941	1.00[EUR][1000 genomes]
rs2997392	1.00[EUR][1000 genomes]
rs2997393	1.00[EUR][1000 genomes]
rs4706842	1.00[AMR][1000 genomes]
rs56935289	1.00[EUR][1000 genomes]
rs58231181	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58678861	1.00[EUR][1000 genomes]
rs60398437	1.00[EUR][1000 genomes]
rs61477549	1.00[EUR][1000 genomes]
rs61546089	1.00[EUR][1000 genomes]
rs6907711	1.00[AMR][1000 genomes]
rs73748800	1.00[EUR][1000 genomes]
rs73751649	1.00[EUR][1000 genomes]
rs7748996	1.00[EUR][1000 genomes]
rs7749724	0.81[AFR][1000 genomes]
rs806842	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9448918	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9448921	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9448922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9448927	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv886310	chr6:80880138-81025879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80968400-81006800	Weak transcription	Psoas Muscle	Psoas
2	chr6:80998000-81009600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:81001200-81025800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:81003400-81005000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:81003800-81006000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:81004400-81005200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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