Variant report

Variant	rs2505931
Chromosome Location	chr6:80839047-80839048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:80815063..80818279-chr6:80837159..80840248,3	MCF-7	breast:
2	chr6:80718444..80720486-chr6:80838754..80840605,2	K562	blood:
3	chr6:80815077..80817880-chr6:80835991..80839240,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000083123	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10943700	1.00[EUR][1000 genomes]
rs151643	1.00[EUR][1000 genomes]
rs151647	1.00[EUR][1000 genomes]
rs151659	1.00[EUR][1000 genomes]
rs16891543	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16891547	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16891556	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs187066	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs192130	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2182852	1.00[EUR][1000 genomes]
rs239499	1.00[EUR][1000 genomes]
rs239503	1.00[EUR][1000 genomes]
rs239510	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs239513	1.00[EUR][1000 genomes]
rs239557	1.00[CEU][hapmap]
rs239559	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs239561	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs239565	1.00[EUR][1000 genomes]
rs240215	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs240223	1.00[EUR][1000 genomes]
rs240227	1.00[EUR][1000 genomes]
rs2476827	0.82[AFR][1000 genomes]
rs2490225	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2490229	1.00[EUR][1000 genomes]
rs2490231	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2490233	1.00[EUR][1000 genomes]
rs2490237	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2490238	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2490242	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2490246	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2490247	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2505933	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2505934	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2505936	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2505938	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2505941	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2505943	1.00[EUR][1000 genomes]
rs2505947	1.00[EUR][1000 genomes]
rs2769338	1.00[EUR][1000 genomes]
rs2997392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2997393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56935289	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58231181	1.00[EUR][1000 genomes]
rs58621476	1.00[EUR][1000 genomes]
rs58678861	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60398437	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6454141	1.00[EUR][1000 genomes]
rs6912898	1.00[EUR][1000 genomes]
rs6925435	1.00[EUR][1000 genomes]
rs7748996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs806842	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9448918	1.00[EUR][1000 genomes]
rs9448921	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9448922	1.00[EUR][1000 genomes]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80817000-80852800	Weak transcription	Psoas Muscle	Psoas
2	chr6:80817600-80842000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr6:80817600-80842400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:80817800-80840600	Weak transcription	Ovary	ovary
5	chr6:80818000-80861400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:80818000-80866000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:80822600-80840600	Weak transcription	Left Ventricle	heart
8	chr6:80824400-80843000	Weak transcription	Fetal Heart	heart
9	chr6:80827400-80842800	Weak transcription	Brain Anterior Caudate	brain
10	chr6:80829400-80844600	Weak transcription	Fetal Thymus	thymus
11	chr6:80829400-80852000	Weak transcription	Fetal Stomach	stomach
12	chr6:80832400-80844600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:80834400-80844200	Strong transcription	Primary T cells from cord blood	blood
14	chr6:80835400-80840800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:80835800-80842800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr6:80835800-80843000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:80836200-80839200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:80836200-80852800	Weak transcription	Right Ventricle	heart
19	chr6:80836400-80839200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr6:80836400-80839800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:80836400-80842800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:80836400-80855800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr6:80836400-80863000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr6:80836400-80891200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:80836600-80839200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:80836600-80840600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr6:80836600-80842200	Strong transcription	Primary B cells from cord blood	blood
28	chr6:80836600-80843000	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr6:80836600-80846800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr6:80836600-80852800	Weak transcription	Pancreas	Pancrea
31	chr6:80836800-80843400	Weak transcription	HepG2	liver
32	chr6:80836800-80843600	Weak transcription	Small Intestine	intestine
33	chr6:80836800-80846000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:80837000-80840200	Weak transcription	Adipose Nuclei	Adipose
35	chr6:80837000-80852600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr6:80837000-80853000	Weak transcription	Fetal Kidney	kidney
37	chr6:80837000-80895200	Weak transcription	Fetal Intestine Small	intestine
38	chr6:80837200-80839200	Weak transcription	Fetal Intestine Large	intestine
39	chr6:80837200-80839800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr6:80837200-80841200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
41	chr6:80837200-80843200	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr6:80837400-80840200	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr6:80837400-80854200	Weak transcription	Brain Substantia Nigra	brain
44	chr6:80837600-80840400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr6:80837600-80840600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr6:80837600-80853000	Weak transcription	Brain Hippocampus Middle	brain
47	chr6:80838000-80839400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:80838000-80840200	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr6:80838000-80843400	Strong transcription	Dnd41	blood
50	chr6:80838000-80846800	Strong transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links