Variant report

Variant	rs16891547
Chromosome Location	chr6:80931423-80931424
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10943700	1.00[EUR][1000 genomes]
rs16891543	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16891556	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2182852	1.00[EUR][1000 genomes]
rs2490225	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2490229	1.00[EUR][1000 genomes]
rs2490231	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2490233	1.00[EUR][1000 genomes]
rs2490237	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2490238	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs2490242	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2490246	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2490247	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2505931	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2505933	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2505934	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2505936	1.00[CEU][hapmap];0.80[YRI][hapmap];1.00[EUR][1000 genomes]
rs2505938	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2505941	1.00[CEU][hapmap];0.80[YRI][hapmap];1.00[EUR][1000 genomes]
rs2505943	1.00[EUR][1000 genomes]
rs2505947	1.00[EUR][1000 genomes]
rs2769338	1.00[EUR][1000 genomes]
rs2997392	1.00[EUR][1000 genomes]
rs2997393	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56935289	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58231181	1.00[EUR][1000 genomes]
rs58621476	1.00[EUR][1000 genomes]
rs58678861	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60398437	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61477549	1.00[EUR][1000 genomes]
rs6454141	1.00[EUR][1000 genomes]
rs6912898	1.00[EUR][1000 genomes]
rs6925435	1.00[EUR][1000 genomes]
rs73748800	1.00[EUR][1000 genomes]
rs7748996	1.00[EUR][1000 genomes]
rs806842	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9448918	1.00[EUR][1000 genomes]
rs9448921	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9448922	1.00[EUR][1000 genomes]
rs9448927	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830708	chr6:80844283-80996876	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv886309	chr6:80880138-80959885	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv886310	chr6:80880138-81025879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1033452	chr6:80888667-81000213	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80882400-80935400	Weak transcription	Dnd41	blood
2	chr6:80896400-80943800	Weak transcription	Right Ventricle	heart
3	chr6:80908000-80936200	Weak transcription	Fetal Lung	lung
4	chr6:80909000-80940200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr6:80910000-80933400	Weak transcription	Esophagus	oesophagus
6	chr6:80911800-80935200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:80914600-80980400	Weak transcription	Ovary	ovary
8	chr6:80914800-80934400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:80914800-80938400	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr6:80914800-80938600	Weak transcription	Liver	Liver
11	chr6:80915400-80938200	Weak transcription	Primary T cells from cord blood	blood
12	chr6:80915400-80942000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:80915800-80956000	Weak transcription	Brain Substantia Nigra	brain
14	chr6:80920800-80943600	Weak transcription	Psoas Muscle	Psoas
15	chr6:80920800-80953800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:80921200-80940200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr6:80921200-80940200	Weak transcription	HSMMtube	muscle
18	chr6:80921400-80973200	Weak transcription	Primary B cells from cord blood	blood
19	chr6:80921600-80938400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:80922200-80964200	Weak transcription	Fetal Intestine Small	intestine
21	chr6:80924000-80933400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr6:80924000-80938400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:80924000-80942800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:80924000-80968400	Weak transcription	Gastric	stomach
25	chr6:80924000-80976000	Weak transcription	HSMM	muscle
26	chr6:80924200-80938600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:80925200-80931800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:80925200-80933200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:80927800-80959800	Weak transcription	Aorta	Aorta
30	chr6:80928000-80933200	Weak transcription	Osteobl	bone
31	chr6:80928000-80936000	Weak transcription	Fetal Stomach	stomach
32	chr6:80928400-80931800	Weak transcription	NHDF-Ad	bronchial
33	chr6:80929400-80933400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:80929400-80938000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr6:80929400-80969200	Weak transcription	Left Ventricle	heart
36	chr6:80929600-80932400	Weak transcription	Primary hematopoietic stem cells	blood

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