Variant report

Variant	rs2490225
Chromosome Location	chr6:80810622-80810623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:80806693..80810912-chr6:80813925..80817766,4	K562	blood:
2	chr6:80802270..80806587-chr6:80809004..80813361,4	K562	blood:

Variant related genes	Relation type
ENSG00000083123	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10943700	1.00[EUR][1000 genomes]
rs151643	1.00[EUR][1000 genomes]
rs151647	1.00[EUR][1000 genomes]
rs151659	1.00[EUR][1000 genomes]
rs16891543	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16891547	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16891556	1.00[CEU][hapmap]
rs16891609	1.00[MEX][hapmap]
rs16891642	1.00[MEX][hapmap]
rs187066	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs192130	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2182852	1.00[EUR][1000 genomes]
rs239499	1.00[EUR][1000 genomes]
rs239503	1.00[EUR][1000 genomes]
rs239510	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs239513	1.00[EUR][1000 genomes]
rs239557	1.00[CEU][hapmap]
rs239559	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs239561	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs239565	1.00[EUR][1000 genomes]
rs240215	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs240223	1.00[EUR][1000 genomes]
rs240227	1.00[EUR][1000 genomes]
rs2490229	1.00[EUR][1000 genomes]
rs2490231	1.00[CEU][hapmap];0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs2490233	1.00[EUR][1000 genomes]
rs2490237	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2490238	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2490242	1.00[EUR][1000 genomes]
rs2490246	1.00[EUR][1000 genomes]
rs2490247	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2505931	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2505933	1.00[EUR][1000 genomes]
rs2505934	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2505936	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2505938	1.00[EUR][1000 genomes]
rs2505941	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2505943	1.00[EUR][1000 genomes]
rs2505947	1.00[EUR][1000 genomes]
rs2769338	1.00[EUR][1000 genomes]
rs2997392	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2997393	1.00[EUR][1000 genomes]
rs56935289	1.00[EUR][1000 genomes]
rs58678861	1.00[EUR][1000 genomes]
rs60398437	1.00[EUR][1000 genomes]
rs6454141	1.00[EUR][1000 genomes]
rs6912898	1.00[EUR][1000 genomes]
rs6925435	1.00[EUR][1000 genomes]
rs7748996	1.00[EUR][1000 genomes]
rs9448905	1.00[MEX][hapmap]
rs9448918	1.00[EUR][1000 genomes]
rs9448921	1.00[CEU][hapmap]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80809600-80815800	Weak transcription	Aorta	Aorta
2	chr6:80810400-80815400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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