Variant report
| Variant | rs2490229 |
|---|---|
| Chromosome Location | chr6:80812125-80812126 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:80802270..80806587-chr6:80809004..80813361,4 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:46)
| rs_ID | r2[population] |
|---|---|
| rs10943700 | 1.00[EUR][1000 genomes] |
| rs151643 | 1.00[EUR][1000 genomes] |
| rs151647 | 1.00[EUR][1000 genomes] |
| rs151659 | 1.00[EUR][1000 genomes] |
| rs16891543 | 1.00[EUR][1000 genomes] |
| rs16891547 | 1.00[EUR][1000 genomes] |
| rs187066 | 1.00[EUR][1000 genomes] |
| rs192130 | 1.00[EUR][1000 genomes] |
| rs2182852 | 1.00[EUR][1000 genomes] |
| rs239499 | 1.00[EUR][1000 genomes] |
| rs239503 | 1.00[EUR][1000 genomes] |
| rs239510 | 1.00[EUR][1000 genomes] |
| rs239513 | 1.00[EUR][1000 genomes] |
| rs239559 | 1.00[EUR][1000 genomes] |
| rs239561 | 1.00[EUR][1000 genomes] |
| rs239565 | 1.00[EUR][1000 genomes] |
| rs240215 | 1.00[EUR][1000 genomes] |
| rs240223 | 1.00[EUR][1000 genomes] |
| rs240227 | 1.00[EUR][1000 genomes] |
| rs2490225 | 1.00[EUR][1000 genomes] |
| rs2490231 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2490233 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2490237 | 1.00[EUR][1000 genomes] |
| rs2490238 | 1.00[EUR][1000 genomes] |
| rs2490242 | 1.00[EUR][1000 genomes] |
| rs2490246 | 1.00[EUR][1000 genomes] |
| rs2490247 | 1.00[EUR][1000 genomes] |
| rs2505931 | 1.00[EUR][1000 genomes] |
| rs2505933 | 1.00[EUR][1000 genomes] |
| rs2505934 | 1.00[EUR][1000 genomes] |
| rs2505936 | 1.00[EUR][1000 genomes] |
| rs2505938 | 1.00[EUR][1000 genomes] |
| rs2505941 | 1.00[EUR][1000 genomes] |
| rs2505943 | 1.00[EUR][1000 genomes] |
| rs2505947 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2769338 | 1.00[EUR][1000 genomes] |
| rs2997392 | 1.00[EUR][1000 genomes] |
| rs2997393 | 1.00[EUR][1000 genomes] |
| rs56935289 | 1.00[EUR][1000 genomes] |
| rs58678861 | 1.00[EUR][1000 genomes] |
| rs60398437 | 1.00[EUR][1000 genomes] |
| rs6454141 | 1.00[EUR][1000 genomes] |
| rs6912898 | 1.00[EUR][1000 genomes] |
| rs6925435 | 1.00[EUR][1000 genomes] |
| rs7748996 | 1.00[EUR][1000 genomes] |
| rs9448918 | 1.00[EUR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:80809600-80815800 | Weak transcription | Aorta | Aorta |
| 2 | chr6:80810400-80815400 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
