Variant report

Variant	rs2490237
Chromosome Location	chr6:80823773-80823774
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:80822914..80827144-chr6:80836132..80839755,3	K562	blood:
2	chr6:80819043..80821225-chr6:80823703..80826632,2	K562	blood:

Variant related genes	Relation type
ENSG00000083123	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10943700	1.00[EUR][1000 genomes]
rs151643	1.00[EUR][1000 genomes]
rs151647	1.00[EUR][1000 genomes]
rs151659	1.00[EUR][1000 genomes]
rs16891543	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16891547	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16891556	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs187066	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs192130	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2182852	1.00[EUR][1000 genomes]
rs239499	1.00[EUR][1000 genomes]
rs239503	1.00[EUR][1000 genomes]
rs239510	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs239513	1.00[EUR][1000 genomes]
rs239557	1.00[CEU][hapmap]
rs239559	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs239561	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs239565	1.00[EUR][1000 genomes]
rs240215	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs240223	1.00[EUR][1000 genomes]
rs240227	1.00[EUR][1000 genomes]
rs2476827	0.81[AFR][1000 genomes]
rs2490225	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2490229	1.00[EUR][1000 genomes]
rs2490231	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2490233	1.00[EUR][1000 genomes]
rs2490238	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2490242	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2490246	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2490247	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2505931	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2505933	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2505934	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2505936	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2505938	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2505941	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2505943	1.00[EUR][1000 genomes]
rs2505947	1.00[EUR][1000 genomes]
rs2769338	1.00[EUR][1000 genomes]
rs2997392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2997393	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56935289	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58231181	1.00[EUR][1000 genomes]
rs58621476	1.00[EUR][1000 genomes]
rs58678861	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60398437	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6454141	1.00[EUR][1000 genomes]
rs6912898	1.00[EUR][1000 genomes]
rs6925435	1.00[EUR][1000 genomes]
rs7748996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9448918	1.00[EUR][1000 genomes]
rs9448921	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9448922	1.00[EUR][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80816800-80836000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:80817000-80838200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:80817000-80852800	Weak transcription	Psoas Muscle	Psoas
4	chr6:80817600-80824600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:80817600-80825400	Weak transcription	Fetal Stomach	stomach
6	chr6:80817600-80828400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:80817600-80832200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:80817600-80836000	Weak transcription	HSMM	muscle
9	chr6:80817600-80838200	Weak transcription	Aorta	Aorta
10	chr6:80817600-80842000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr6:80817600-80842400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:80817800-80824200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:80817800-80824600	Weak transcription	Primary T cells from cord blood	blood
14	chr6:80817800-80825400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:80817800-80826200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:80817800-80827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:80817800-80828600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr6:80817800-80830600	Weak transcription	Brain Hippocampus Middle	brain
19	chr6:80817800-80840600	Weak transcription	Ovary	ovary
20	chr6:80818000-80838200	Weak transcription	Fetal Lung	lung
21	chr6:80818000-80861400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:80818000-80866000	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr6:80818400-80826200	Weak transcription	Liver	Liver
24	chr6:80821200-80826800	Weak transcription	Fetal Muscle Leg	muscle
25	chr6:80821400-80838000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:80822600-80840600	Weak transcription	Left Ventricle	heart
27	chr6:80823000-80826200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:80823200-80824400	Weak transcription	Fetal Brain Female	brain
29	chr6:80823200-80828600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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