Variant report

Variant	rs16891543
Chromosome Location	chr6:80927692-80927693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10943700	1.00[EUR][1000 genomes]
rs16891547	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16891556	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2182852	1.00[EUR][1000 genomes]
rs2490225	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2490229	1.00[EUR][1000 genomes]
rs2490231	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2490233	1.00[EUR][1000 genomes]
rs2490237	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2490238	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs2490242	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2490246	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2490247	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2505931	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2505933	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2505934	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2505936	1.00[CEU][hapmap];1.00[LWK][hapmap];0.84[MKK][hapmap];0.80[YRI][hapmap];1.00[EUR][1000 genomes]
rs2505938	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2505941	1.00[CEU][hapmap];1.00[LWK][hapmap];0.84[MKK][hapmap];0.80[YRI][hapmap];1.00[EUR][1000 genomes]
rs2505943	1.00[EUR][1000 genomes]
rs2505947	1.00[EUR][1000 genomes]
rs2769338	1.00[EUR][1000 genomes]
rs2997392	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2997393	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56935289	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58231181	1.00[EUR][1000 genomes]
rs58621476	1.00[EUR][1000 genomes]
rs58678861	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60398437	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61477549	1.00[EUR][1000 genomes]
rs6454141	1.00[EUR][1000 genomes]
rs6912898	1.00[EUR][1000 genomes]
rs6925435	1.00[EUR][1000 genomes]
rs73748800	1.00[EUR][1000 genomes]
rs7748996	1.00[EUR][1000 genomes]
rs806842	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9448918	1.00[EUR][1000 genomes]
rs9448921	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9448922	1.00[EUR][1000 genomes]
rs9448927	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830708	chr6:80844283-80996876	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv886309	chr6:80880138-80959885	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv886310	chr6:80880138-81025879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1033452	chr6:80888667-81000213	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80882400-80935400	Weak transcription	Dnd41	blood
2	chr6:80891600-80931200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:80896400-80943800	Weak transcription	Right Ventricle	heart
4	chr6:80908000-80936200	Weak transcription	Fetal Lung	lung
5	chr6:80909000-80940200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr6:80910000-80933400	Weak transcription	Esophagus	oesophagus
7	chr6:80911800-80935200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:80914600-80980400	Weak transcription	Ovary	ovary
9	chr6:80914800-80929000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:80914800-80934400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:80914800-80938400	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr6:80914800-80938600	Weak transcription	Liver	Liver
13	chr6:80915400-80938200	Weak transcription	Primary T cells from cord blood	blood
14	chr6:80915400-80942000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:80915800-80956000	Weak transcription	Brain Substantia Nigra	brain
16	chr6:80916800-80930000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:80920800-80929200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:80920800-80943600	Weak transcription	Psoas Muscle	Psoas
19	chr6:80920800-80953800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:80921200-80929000	Weak transcription	Left Ventricle	heart
21	chr6:80921200-80940200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr6:80921200-80940200	Weak transcription	HSMMtube	muscle
23	chr6:80921400-80929200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr6:80921400-80973200	Weak transcription	Primary B cells from cord blood	blood
25	chr6:80921600-80938400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:80922200-80964200	Weak transcription	Fetal Intestine Small	intestine
27	chr6:80922400-80929200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:80922600-80930000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:80924000-80928000	Weak transcription	Stomach Mucosa	stomach
30	chr6:80924000-80933400	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr6:80924000-80938400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:80924000-80942800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:80924000-80968400	Weak transcription	Gastric	stomach
34	chr6:80924000-80976000	Weak transcription	HSMM	muscle
35	chr6:80924200-80938600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:80925200-80931800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:80925200-80933200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:80926800-80928000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:80927200-80928000	Enhancers	Osteobl	bone
40	chr6:80927200-80928600	Enhancers	Rectal Smooth Muscle	rectum
41	chr6:80927400-80927800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr6:80927400-80927800	Enhancers	Aorta	Aorta
43	chr6:80927400-80928000	Enhancers	Fetal Stomach	stomach
44	chr6:80927400-80928000	Flanking Active TSS	NHDF-Ad	bronchial
45	chr6:80927600-80928000	Active TSS	Colon Smooth Muscle	Colon
46	chr6:80927600-80928000	Enhancers	Fetal Heart	heart
47	chr6:80927600-80928200	Enhancers	Stomach Smooth Muscle	stomach

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