Variant report

Variant	rs73748800
Chromosome Location	chr6:81047304-81047305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10943700	1.00[EUR][1000 genomes]
rs16891543	1.00[EUR][1000 genomes]
rs16891547	1.00[EUR][1000 genomes]
rs2490246	1.00[EUR][1000 genomes]
rs2490247	1.00[EUR][1000 genomes]
rs2505941	1.00[EUR][1000 genomes]
rs56935289	1.00[EUR][1000 genomes]
rs58231181	1.00[EUR][1000 genomes]
rs58621476	1.00[EUR][1000 genomes]
rs58678861	1.00[EUR][1000 genomes]
rs60398437	1.00[EUR][1000 genomes]
rs61477549	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61546089	1.00[EUR][1000 genomes]
rs73751649	1.00[EUR][1000 genomes]
rs806842	1.00[EUR][1000 genomes]
rs9448918	1.00[EUR][1000 genomes]
rs9448921	1.00[EUR][1000 genomes]
rs9448922	1.00[EUR][1000 genomes]
rs9448927	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv1796319	chr6:81034505-81058025	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	esv16646	chr6:81040322-81055387	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81005200-81056200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:81029400-81079600	Weak transcription	HSMM	muscle
3	chr6:81033800-81070200	Weak transcription	Left Ventricle	heart
4	chr6:81042200-81056400	Weak transcription	Fetal Heart	heart
5	chr6:81044400-81048000	Weak transcription	Fetal Brain Female	brain
6	chr6:81044400-81050200	Weak transcription	Fetal Kidney	kidney
7	chr6:81045200-81047800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:81045200-81047800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:81045200-81047800	Weak transcription	Aorta	Aorta
10	chr6:81045200-81048000	Weak transcription	Fetal Stomach	stomach
11	chr6:81045200-81051000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:81045600-81047800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:81045600-81047800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:81045600-81047800	Weak transcription	Liver	Liver
15	chr6:81045600-81051200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:81045800-81052600	Weak transcription	Osteobl	bone
17	chr6:81046600-81047600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:81046600-81047600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr6:81046600-81050400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:81046800-81047600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr6:81046800-81051400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr6:81047000-81048000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:81047000-81051200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:81047200-81047600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr6:81047200-81048200	Weak transcription	HUVEC	blood vessel
26	chr6:81047200-81048400	Enhancers	HUES64 Cell Line	embryonic stem cell

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