Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10943700	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16891543	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16891547	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16891556	1.00[CEU][hapmap]
rs2082998	0.82[AFR][1000 genomes]
rs2322764	1.00[AMR][1000 genomes]
rs2490242	1.00[EUR][1000 genomes]
rs2490246	1.00[EUR][1000 genomes]
rs2490247	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2505931	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2505933	1.00[EUR][1000 genomes]
rs2505934	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2505936	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2505938	1.00[EUR][1000 genomes]
rs2505941	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4706842	1.00[AMR][1000 genomes]
rs56935289	1.00[EUR][1000 genomes]
rs58231181	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58621476	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58678861	1.00[EUR][1000 genomes]
rs60398437	1.00[EUR][1000 genomes]
rs61477549	1.00[EUR][1000 genomes]
rs61546089	1.00[EUR][1000 genomes]
rs6907711	1.00[AMR][1000 genomes]
rs73748800	1.00[EUR][1000 genomes]
rs73751649	1.00[EUR][1000 genomes]
rs7749724	0.82[AFR][1000 genomes]
rs9448918	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9448921	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9448922	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9448927	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81005200-81056200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:81013800-81028800	Weak transcription	HSMM	muscle
3	chr6:81015600-81036400	Weak transcription	Ovary	ovary
4	chr6:81015600-81037400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:81026800-81028600	Weak transcription	NHDF-Ad	bronchial
6	chr6:81026800-81037400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:81027000-81028800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:81027000-81044600	Weak transcription	Aorta	Aorta
9	chr6:81027800-81028800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:81027800-81028800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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