Variant report

Variant	rs2490233
Chromosome Location	chr6:80815102-80815103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:80815077..80817880-chr6:80835991..80839240,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000083123	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10943700	1.00[EUR][1000 genomes]
rs151643	1.00[EUR][1000 genomes]
rs151647	1.00[EUR][1000 genomes]
rs151659	1.00[EUR][1000 genomes]
rs16891543	1.00[EUR][1000 genomes]
rs16891547	1.00[EUR][1000 genomes]
rs187066	1.00[EUR][1000 genomes]
rs192130	1.00[EUR][1000 genomes]
rs2182852	1.00[EUR][1000 genomes]
rs239499	1.00[EUR][1000 genomes]
rs239503	1.00[EUR][1000 genomes]
rs239510	1.00[EUR][1000 genomes]
rs239513	1.00[EUR][1000 genomes]
rs239559	1.00[EUR][1000 genomes]
rs239561	1.00[EUR][1000 genomes]
rs239565	1.00[EUR][1000 genomes]
rs240215	1.00[EUR][1000 genomes]
rs240223	1.00[EUR][1000 genomes]
rs240227	1.00[EUR][1000 genomes]
rs2490225	1.00[EUR][1000 genomes]
rs2490229	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2490231	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2490237	1.00[EUR][1000 genomes]
rs2490238	1.00[EUR][1000 genomes]
rs2490242	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2490246	1.00[EUR][1000 genomes]
rs2490247	1.00[EUR][1000 genomes]
rs2505931	1.00[EUR][1000 genomes]
rs2505933	1.00[EUR][1000 genomes]
rs2505934	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2505936	1.00[EUR][1000 genomes]
rs2505938	1.00[EUR][1000 genomes]
rs2505941	1.00[EUR][1000 genomes]
rs2505943	1.00[EUR][1000 genomes]
rs2505947	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2769338	1.00[EUR][1000 genomes]
rs2997392	1.00[EUR][1000 genomes]
rs2997393	1.00[EUR][1000 genomes]
rs56935289	1.00[EUR][1000 genomes]
rs58621476	1.00[EUR][1000 genomes]
rs58678861	1.00[EUR][1000 genomes]
rs60398437	1.00[EUR][1000 genomes]
rs6454141	1.00[EUR][1000 genomes]
rs6912898	1.00[EUR][1000 genomes]
rs6925435	1.00[EUR][1000 genomes]
rs7748996	1.00[EUR][1000 genomes]
rs9448918	1.00[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80809600-80815800	Weak transcription	Aorta	Aorta
2	chr6:80810400-80815400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:80814000-80815800	Enhancers	Liver	Liver
4	chr6:80814200-80815600	Enhancers	HepG2	liver
5	chr6:80814800-80815200	Weak transcription	GM12878-XiMat	blood

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