Variant report

Variant	rs2997393
Chromosome Location	chr6:80832973-80832974
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10943700	1.00[EUR][1000 genomes]
rs151643	1.00[EUR][1000 genomes]
rs151647	1.00[EUR][1000 genomes]
rs151659	1.00[EUR][1000 genomes]
rs16891543	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16891547	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs187066	1.00[EUR][1000 genomes]
rs192130	1.00[EUR][1000 genomes]
rs2182852	1.00[EUR][1000 genomes]
rs239499	1.00[EUR][1000 genomes]
rs239503	1.00[EUR][1000 genomes]
rs239510	1.00[EUR][1000 genomes]
rs239513	1.00[EUR][1000 genomes]
rs239559	1.00[EUR][1000 genomes]
rs239561	1.00[EUR][1000 genomes]
rs239565	1.00[EUR][1000 genomes]
rs240215	1.00[EUR][1000 genomes]
rs240223	1.00[EUR][1000 genomes]
rs240227	1.00[EUR][1000 genomes]
rs2476827	0.82[AFR][1000 genomes]
rs2490225	1.00[EUR][1000 genomes]
rs2490229	1.00[EUR][1000 genomes]
rs2490231	1.00[EUR][1000 genomes]
rs2490233	1.00[EUR][1000 genomes]
rs2490237	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2490238	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2490242	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2490246	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2490247	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2505931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2505933	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2505934	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2505936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2505938	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2505941	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2505943	1.00[EUR][1000 genomes]
rs2505947	1.00[EUR][1000 genomes]
rs2769338	1.00[EUR][1000 genomes]
rs2997392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56935289	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58231181	1.00[EUR][1000 genomes]
rs58621476	1.00[EUR][1000 genomes]
rs58678861	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60398437	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6454141	1.00[EUR][1000 genomes]
rs6912898	1.00[EUR][1000 genomes]
rs6925435	1.00[EUR][1000 genomes]
rs7748996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9448918	1.00[EUR][1000 genomes]
rs9448921	1.00[EUR][1000 genomes]
rs9448922	1.00[EUR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80816800-80836000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:80817000-80838200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:80817000-80852800	Weak transcription	Psoas Muscle	Psoas
4	chr6:80817600-80836000	Weak transcription	HSMM	muscle
5	chr6:80817600-80838200	Weak transcription	Aorta	Aorta
6	chr6:80817600-80842000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:80817600-80842400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:80817800-80840600	Weak transcription	Ovary	ovary
9	chr6:80818000-80838200	Weak transcription	Fetal Lung	lung
10	chr6:80818000-80861400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:80818000-80866000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr6:80821400-80838000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:80822600-80840600	Weak transcription	Left Ventricle	heart
14	chr6:80824400-80843000	Weak transcription	Fetal Heart	heart
15	chr6:80827400-80842800	Weak transcription	Brain Anterior Caudate	brain
16	chr6:80829200-80838200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:80829400-80834400	Weak transcription	Primary T cells from cord blood	blood
18	chr6:80829400-80844600	Weak transcription	Fetal Thymus	thymus
19	chr6:80829400-80852000	Weak transcription	Fetal Stomach	stomach
20	chr6:80832400-80844600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:80832600-80837800	Weak transcription	NHEK	skin
22	chr6:80832600-80838000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr6:80832600-80838200	Weak transcription	K562	blood

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