Variant report

Variant	rs61598535
Chromosome Location	chr8:49615786-49615787
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49425401..49427959-chr8:49613311..49616115,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10089076	1.00[AMR][1000 genomes]
rs10090292	1.00[AMR][1000 genomes]
rs10098793	1.00[AMR][1000 genomes]
rs10099443	1.00[AMR][1000 genomes]
rs10100701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10104194	1.00[AMR][1000 genomes]
rs10109238	1.00[AMR][1000 genomes]
rs1384218	1.00[AMR][1000 genomes]
rs16938326	1.00[AMR][1000 genomes]
rs16938489	1.00[AMR][1000 genomes]
rs16938498	1.00[AMR][1000 genomes]
rs16938500	1.00[AMR][1000 genomes]
rs16938602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28434187	0.96[AFR][1000 genomes]
rs28556954	1.00[AMR][1000 genomes]
rs28573934	1.00[AMR][1000 genomes]
rs28651919	0.82[AFR][1000 genomes]
rs28709071	1.00[AMR][1000 genomes]
rs28781607	1.00[AMR][1000 genomes]
rs28817008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56177835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56787106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56795854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58750692	1.00[AMR][1000 genomes]
rs6988916	1.00[AMR][1000 genomes]
rs7017560	1.00[AMR][1000 genomes]
rs73678173	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678187	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678188	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678200	1.00[AMR][1000 genomes]
rs73678201	1.00[AMR][1000 genomes]
rs7819693	1.00[AMR][1000 genomes]
rs7823444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9657076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9694357	1.00[AMR][1000 genomes]
rs9886548	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49595800-49616800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:49605600-49621000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr8:49605600-49621800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:49605800-49621200	Enhancers	HMEC	breast
5	chr8:49609200-49621200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:49611800-49617200	Weak transcription	Fetal Kidney	kidney
7	chr8:49612400-49617600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:49612600-49617000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:49612600-49617800	Weak transcription	Fetal Brain Female	brain
10	chr8:49612800-49616600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:49612800-49617600	Weak transcription	Fetal Thymus	thymus
12	chr8:49612800-49617600	Weak transcription	Right Ventricle	heart
13	chr8:49612800-49618000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:49612800-49619600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr8:49612800-49626400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr8:49613000-49616600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr8:49613000-49617600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr8:49613000-49617800	Weak transcription	Fetal Stomach	stomach
19	chr8:49614600-49616400	Enhancers	NHEK	skin
20	chr8:49614800-49617800	Weak transcription	Left Ventricle	heart
21	chr8:49614800-49618000	Weak transcription	Fetal Muscle Leg	muscle
22	chr8:49615200-49616200	Weak transcription	Fetal Heart	heart
23	chr8:49615200-49617600	Weak transcription	Fetal Lung	lung
24	chr8:49615600-49615800	Enhancers	Esophagus	oesophagus
25	chr8:49615600-49615800	Enhancers	Right Atrium	heart

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