Variant report

Variant	rs16938602
Chromosome Location	chr8:49617767-49617768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49616836..49619308-chr8:49627377..49629185,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10089076	1.00[AMR][1000 genomes]
rs10090292	1.00[AMR][1000 genomes]
rs10098793	1.00[AMR][1000 genomes]
rs10099006	1.00[YRI][hapmap]
rs10099443	1.00[AMR][1000 genomes]
rs10100701	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10104194	1.00[AMR][1000 genomes]
rs10108968	1.00[YRI][hapmap]
rs10109238	1.00[AMR][1000 genomes]
rs10504068	1.00[YRI][hapmap]
rs1384218	1.00[AMR][1000 genomes]
rs16938326	1.00[AMR][1000 genomes]
rs16938489	1.00[AMR][1000 genomes]
rs16938498	1.00[AMR][1000 genomes]
rs16938500	1.00[AMR][1000 genomes]
rs16938740	1.00[YRI][hapmap]
rs16938750	1.00[YRI][hapmap]
rs16938756	1.00[YRI][hapmap]
rs16938764	1.00[YRI][hapmap]
rs16938767	0.90[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap]
rs28434187	0.96[AFR][1000 genomes]
rs28556954	1.00[AMR][1000 genomes]
rs28573934	1.00[AMR][1000 genomes]
rs28651919	0.82[AFR][1000 genomes]
rs28709071	1.00[AMR][1000 genomes]
rs28781607	1.00[AMR][1000 genomes]
rs28817008	1.00[ASW][hapmap];0.90[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56177835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56787106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56795854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58750692	1.00[AMR][1000 genomes]
rs61598535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6988916	1.00[AMR][1000 genomes]
rs7017560	1.00[AMR][1000 genomes]
rs73678173	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678187	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678188	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678200	1.00[AMR][1000 genomes]
rs73678201	1.00[AMR][1000 genomes]
rs7819693	1.00[AMR][1000 genomes]
rs7823444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7826258	1.00[YRI][hapmap]
rs7826724	1.00[YRI][hapmap]
rs7842381	1.00[YRI][hapmap]
rs9298065	1.00[YRI][hapmap]
rs9657076	1.00[ASW][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9694357	1.00[AMR][1000 genomes]
rs9886548	1.00[ASW][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49605600-49621000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:49605600-49621800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:49605800-49621200	Enhancers	HMEC	breast
4	chr8:49609200-49621200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:49612600-49617800	Weak transcription	Fetal Brain Female	brain
6	chr8:49612800-49618000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:49612800-49619600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr8:49612800-49626400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr8:49613000-49617800	Weak transcription	Fetal Stomach	stomach
10	chr8:49614800-49617800	Weak transcription	Left Ventricle	heart
11	chr8:49614800-49618000	Weak transcription	Fetal Muscle Leg	muscle
12	chr8:49615800-49618200	Weak transcription	Right Atrium	heart
13	chr8:49616200-49618800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr8:49616200-49622400	Enhancers	Esophagus	oesophagus
15	chr8:49616400-49618800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr8:49616600-49617800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr8:49616600-49618000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:49616600-49618400	Enhancers	Placenta	Placenta
19	chr8:49616800-49620000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr8:49617000-49617800	Flanking Active TSS	NHEK	skin
21	chr8:49617000-49618200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr8:49617200-49618000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr8:49617200-49618000	Enhancers	Fetal Kidney	kidney
24	chr8:49617200-49622400	Enhancers	Fetal Heart	heart
25	chr8:49617400-49618800	Weak transcription	Spleen	Spleen
26	chr8:49617600-49617800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr8:49617600-49618000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr8:49617600-49618000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr8:49617600-49618200	Enhancers	Fetal Lung	lung
30	chr8:49617600-49619200	Enhancers	Fetal Thymus	thymus
31	chr8:49617600-49621200	Weak transcription	Brain Germinal Matrix	brain
32	chr8:49617600-49621800	Enhancers	Right Ventricle	heart

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