Variant report

Variant	rs9298065
Chromosome Location	chr8:49677579-49677580
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10088413	1.00[AMR][1000 genomes]
rs10094086	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10094476	0.86[AFR][1000 genomes]
rs10099006	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10099447	1.00[AMR][1000 genomes]
rs10100402	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10100701	1.00[YRI][hapmap]
rs10103893	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10104103	1.00[AMR][1000 genomes]
rs10104194	0.90[AFR][1000 genomes]
rs10108968	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10109238	0.90[AFR][1000 genomes]
rs10504068	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938362	1.00[AMR][1000 genomes]
rs16938537	1.00[AMR][1000 genomes]
rs16938602	1.00[YRI][hapmap]
rs16938740	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938750	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938756	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938764	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938765	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938767	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28377247	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28404323	1.00[AMR][1000 genomes]
rs28477899	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28496662	1.00[AMR][1000 genomes]
rs28556954	0.90[AFR][1000 genomes]
rs28602767	1.00[AMR][1000 genomes]
rs28649400	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28702592	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28709071	0.90[AFR][1000 genomes]
rs28772946	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28781607	0.90[AFR][1000 genomes]
rs28817008	1.00[YRI][hapmap]
rs28861728	0.90[AFR][1000 genomes]
rs56184941	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57965549	1.00[AMR][1000 genomes]
rs58750692	0.86[AFR][1000 genomes]
rs60181153	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60465098	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61184099	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472052	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472053	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472107	1.00[AMR][1000 genomes]
rs6981279	0.84[AFR][1000 genomes]
rs6988916	0.90[AFR][1000 genomes]
rs6992694	1.00[AMR][1000 genomes]
rs7000393	1.00[AMR][1000 genomes]
rs73678167	1.00[AMR][1000 genomes]
rs73678187	0.86[AFR][1000 genomes]
rs73678188	0.86[AFR][1000 genomes]
rs73678200	0.90[AFR][1000 genomes]
rs73678201	0.90[AFR][1000 genomes]
rs73680707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680714	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680715	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680718	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680720	1.00[AMR][1000 genomes]
rs73680726	1.00[AMR][1000 genomes]
rs73680728	1.00[AMR][1000 genomes]
rs7819693	0.90[AFR][1000 genomes]
rs7825162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7826258	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7826724	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7838334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7839672	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7842381	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9657076	1.00[YRI][hapmap]
rs9886548	1.00[YRI][hapmap];0.86[AFR][1000 genomes]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49675000-49677600	Enhancers	Colon Smooth Muscle	Colon
2	chr8:49675000-49677600	Enhancers	Ovary	ovary
3	chr8:49675200-49679600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr8:49675400-49678200	Enhancers	Fetal Stomach	stomach
5	chr8:49675600-49677600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:49675600-49677600	Enhancers	Adipose Nuclei	Adipose
7	chr8:49675600-49677600	Enhancers	Fetal Brain Male	brain
8	chr8:49675600-49677600	Enhancers	Fetal Lung	lung
9	chr8:49675600-49677600	Enhancers	Fetal Muscle Leg	muscle
10	chr8:49675600-49677800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr8:49675600-49677800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr8:49675600-49678000	Enhancers	Placenta Amnion	Placenta Amnion
13	chr8:49675600-49678400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr8:49675600-49678400	Enhancers	Placenta	Placenta
15	chr8:49675600-49678800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr8:49675800-49677800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr8:49675800-49677800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:49675800-49677800	Enhancers	NHLF	lung
19	chr8:49675800-49678000	Enhancers	NHDF-Ad	bronchial
20	chr8:49675800-49678600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr8:49676000-49677600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr8:49676000-49677600	Enhancers	HMEC	breast
23	chr8:49676200-49677600	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr8:49676200-49677600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr8:49676200-49677800	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr8:49676400-49677600	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr8:49676400-49677600	Flanking Active TSS	NHEK	skin
28	chr8:49676600-49677600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr8:49676600-49677600	Active TSS	Pancreas	Pancrea
30	chr8:49676600-49677600	Flanking Active TSS	Osteobl	bone
31	chr8:49676600-49677800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
32	chr8:49676600-49677800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr8:49676600-49677800	Enhancers	NH-A	brain
34	chr8:49676600-49678000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr8:49676800-49677600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
36	chr8:49676800-49677800	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr8:49677000-49677600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr8:49677000-49677600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr8:49677000-49677600	Enhancers	Fetal Intestine Small	intestine
40	chr8:49677000-49677600	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr8:49677000-49677800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr8:49677000-49678000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr8:49677000-49678400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr8:49677200-49677600	Enhancers	Fetal Intestine Large	intestine
45	chr8:49677200-49677800	Enhancers	H9 Cell Line	embryonic stem cell
46	chr8:49677200-49678000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr8:49677400-49677600	Bivalent Enhancer	Brain Cingulate Gyrus	brain
48	chr8:49677400-49677600	Enhancers	Lung	lung

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