Variant report

Variant	rs10104103
Chromosome Location	chr8:49811626-49811627
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49776108..49777646-chr8:49810328..49812918,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10088413	1.00[AMR][1000 genomes]
rs10094086	1.00[AMR][1000 genomes]
rs10099006	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10099447	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10100402	1.00[AMR][1000 genomes]
rs10100701	1.00[YRI][hapmap]
rs10103893	1.00[AMR][1000 genomes]
rs10108968	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10504068	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16938537	1.00[AMR][1000 genomes]
rs16938602	1.00[YRI][hapmap]
rs16938740	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16938748	1.00[AMR][1000 genomes]
rs16938750	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16938756	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16938764	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16938765	1.00[AMR][1000 genomes]
rs16938767	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs28377247	1.00[AMR][1000 genomes]
rs28404323	1.00[AMR][1000 genomes]
rs28477899	1.00[AMR][1000 genomes]
rs28496662	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28602767	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28649400	1.00[AMR][1000 genomes]
rs28702592	1.00[AMR][1000 genomes]
rs28772946	1.00[AMR][1000 genomes]
rs28817008	1.00[YRI][hapmap]
rs56184941	1.00[AMR][1000 genomes]
rs57965549	1.00[AMR][1000 genomes]
rs60181153	1.00[AMR][1000 genomes]
rs60465098	1.00[AMR][1000 genomes]
rs61184099	1.00[AMR][1000 genomes]
rs6472052	1.00[AMR][1000 genomes]
rs6472053	1.00[AMR][1000 genomes]
rs6472107	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7000393	1.00[AMR][1000 genomes]
rs73678167	1.00[AMR][1000 genomes]
rs73680707	1.00[AMR][1000 genomes]
rs73680710	1.00[AMR][1000 genomes]
rs73680711	1.00[AMR][1000 genomes]
rs73680714	1.00[AMR][1000 genomes]
rs73680715	1.00[AMR][1000 genomes]
rs73680718	1.00[AMR][1000 genomes]
rs73680720	1.00[AMR][1000 genomes]
rs73680726	1.00[AMR][1000 genomes]
rs73680728	1.00[AMR][1000 genomes]
rs7825162	1.00[AMR][1000 genomes]
rs7826258	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7826724	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7838334	1.00[AMR][1000 genomes]
rs7839672	1.00[AMR][1000 genomes]
rs7842381	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9298065	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9657076	1.00[YRI][hapmap]
rs9886548	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890854	chr8:49738821-49838908	Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3377959	chr8:49809299-49813497	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49802000-49814800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr8:49807200-49811800	Weak transcription	NHDF-Ad	bronchial
3	chr8:49807600-49812000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:49808800-49818600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:49809400-49817800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr8:49809800-49811800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:49809800-49814800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:49810000-49814800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr8:49810400-49811800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr8:49810600-49811800	Weak transcription	Psoas Muscle	Psoas
11	chr8:49810600-49813000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:49810800-49811800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr8:49811200-49812400	Enhancers	Fetal Heart	heart
14	chr8:49811200-49812600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr8:49811200-49812600	Enhancers	Fetal Muscle Trunk	muscle
16	chr8:49811400-49812000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr8:49811400-49812000	Enhancers	Left Ventricle	heart
18	chr8:49811400-49812200	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr8:49811400-49812200	Enhancers	Hela-S3	cervix
20	chr8:49811400-49812600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr8:49811400-49812800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr8:49811400-49812800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr8:49811400-49812800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr8:49811400-49812800	Enhancers	NHLF	lung
25	chr8:49811400-49815400	Enhancers	NH-A	brain
26	chr8:49811600-49812200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr8:49811600-49812400	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr8:49811600-49812400	Enhancers	HMEC	breast
29	chr8:49811600-49812600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr8:49811600-49812600	Enhancers	HSMMtube	muscle
31	chr8:49811600-49812600	Enhancers	Osteobl	bone
32	chr8:49811600-49812800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr8:49811600-49812800	Enhancers	Muscle Satellite Cultured Cells	--
34	chr8:49811600-49812800	Enhancers	Fetal Muscle Leg	muscle
35	chr8:49811600-49813000	Enhancers	HSMM	muscle
36	chr8:49811600-49822000	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links