Variant report

Variant	rs28602767
Chromosome Location	chr8:49775055-49775056
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10088413	1.00[AMR][1000 genomes]
rs10094086	1.00[AMR][1000 genomes]
rs10099006	1.00[AMR][1000 genomes]
rs10099447	1.00[AMR][1000 genomes]
rs10100402	1.00[AMR][1000 genomes]
rs10103893	1.00[AMR][1000 genomes]
rs10104103	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10108968	1.00[AMR][1000 genomes]
rs10504068	1.00[AMR][1000 genomes]
rs16938362	1.00[AMR][1000 genomes]
rs16938537	1.00[AMR][1000 genomes]
rs16938740	1.00[AMR][1000 genomes]
rs16938748	1.00[AMR][1000 genomes]
rs16938750	1.00[AMR][1000 genomes]
rs16938756	1.00[AMR][1000 genomes]
rs16938764	1.00[AMR][1000 genomes]
rs16938765	1.00[AMR][1000 genomes]
rs16938767	1.00[AMR][1000 genomes]
rs28377247	1.00[AMR][1000 genomes]
rs28404323	1.00[AMR][1000 genomes]
rs28477899	1.00[AMR][1000 genomes]
rs28496662	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28649400	1.00[AMR][1000 genomes]
rs28702592	1.00[AMR][1000 genomes]
rs28772946	1.00[AMR][1000 genomes]
rs56184941	1.00[AMR][1000 genomes]
rs57965549	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60181153	1.00[AMR][1000 genomes]
rs60465098	1.00[AMR][1000 genomes]
rs61184099	1.00[AMR][1000 genomes]
rs6472052	1.00[AMR][1000 genomes]
rs6472053	1.00[AMR][1000 genomes]
rs6472107	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6992694	1.00[AMR][1000 genomes]
rs7000393	1.00[AMR][1000 genomes]
rs73678167	1.00[AMR][1000 genomes]
rs73680707	1.00[AMR][1000 genomes]
rs73680710	1.00[AMR][1000 genomes]
rs73680711	1.00[AMR][1000 genomes]
rs73680714	1.00[AMR][1000 genomes]
rs73680715	1.00[AMR][1000 genomes]
rs73680718	1.00[AMR][1000 genomes]
rs73680720	1.00[AMR][1000 genomes]
rs73680726	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680728	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7825162	1.00[AMR][1000 genomes]
rs7826258	1.00[AMR][1000 genomes]
rs7826724	1.00[AMR][1000 genomes]
rs7838334	1.00[AMR][1000 genomes]
rs7839672	1.00[AMR][1000 genomes]
rs7842381	1.00[AMR][1000 genomes]
rs9298065	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890854	chr8:49738821-49838908	Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv528067	chr8:49769454-49779947	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49765400-49776600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:49768200-49775200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr8:49771800-49776000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr8:49772800-49775800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:49772800-49777000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:49773000-49775600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr8:49773200-49775800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr8:49773200-49779200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr8:49773600-49775400	Weak transcription	Right Atrium	heart
10	chr8:49773600-49777400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr8:49774200-49775400	Enhancers	Fetal Brain Male	brain
12	chr8:49774600-49776400	Enhancers	Fetal Lung	lung
13	chr8:49774800-49775800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr8:49774800-49776400	Weak transcription	Lung	lung
15	chr8:49774800-49777000	Enhancers	Fetal Kidney	kidney

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