Variant report

Variant	rs73680726
Chromosome Location	chr8:49764535-49764536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49758119..49760348-chr8:49762512..49764848,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10088413	1.00[AMR][1000 genomes]
rs10094086	1.00[AMR][1000 genomes]
rs10094476	0.87[AFR][1000 genomes]
rs10099006	1.00[AMR][1000 genomes]
rs10099447	1.00[AMR][1000 genomes]
rs10100402	1.00[AMR][1000 genomes]
rs10103893	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10104103	1.00[AMR][1000 genomes]
rs10108968	1.00[AMR][1000 genomes]
rs10504068	1.00[AMR][1000 genomes]
rs16938362	1.00[AMR][1000 genomes]
rs16938537	1.00[AMR][1000 genomes]
rs16938740	1.00[AMR][1000 genomes]
rs16938748	1.00[AMR][1000 genomes]
rs16938750	1.00[AMR][1000 genomes]
rs16938756	1.00[AMR][1000 genomes]
rs16938764	1.00[AMR][1000 genomes]
rs16938765	1.00[AMR][1000 genomes]
rs16938767	1.00[AMR][1000 genomes]
rs28377247	1.00[AMR][1000 genomes]
rs28404323	1.00[AMR][1000 genomes]
rs28477899	1.00[AMR][1000 genomes]
rs28496662	1.00[AMR][1000 genomes]
rs28602767	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28649400	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28702592	1.00[AMR][1000 genomes]
rs28772946	1.00[AMR][1000 genomes]
rs56184941	1.00[AMR][1000 genomes]
rs57965549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60181153	1.00[AMR][1000 genomes]
rs60465098	1.00[AMR][1000 genomes]
rs61184099	1.00[AMR][1000 genomes]
rs6472052	1.00[AMR][1000 genomes]
rs6472053	1.00[AMR][1000 genomes]
rs6472107	1.00[AMR][1000 genomes]
rs6992694	1.00[AMR][1000 genomes]
rs7000393	1.00[AMR][1000 genomes]
rs73678167	1.00[AMR][1000 genomes]
rs73680707	1.00[AMR][1000 genomes]
rs73680710	1.00[AMR][1000 genomes]
rs73680711	1.00[AMR][1000 genomes]
rs73680714	1.00[AMR][1000 genomes]
rs73680715	1.00[AMR][1000 genomes]
rs73680718	1.00[AMR][1000 genomes]
rs73680720	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7825162	1.00[AMR][1000 genomes]
rs7826258	1.00[AMR][1000 genomes]
rs7826724	1.00[AMR][1000 genomes]
rs7838334	1.00[AMR][1000 genomes]
rs7839672	1.00[AMR][1000 genomes]
rs7842381	1.00[AMR][1000 genomes]
rs9298065	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890854	chr8:49738821-49838908	Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49758600-49766000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:49758800-49764600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:49758800-49765200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr8:49762800-49765600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr8:49763000-49765800	Enhancers	HMEC	breast
6	chr8:49763000-49766200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:49764000-49765400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:49764200-49767600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:49764400-49765400	Weak transcription	Fetal Lung	lung
10	chr8:49764400-49765400	Weak transcription	NHEK	skin

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