Variant report

Variant	rs16938740
Chromosome Location	chr8:49680275-49680276
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49678177..49680630-chr8:49701086..49703222,2	MCF-7	breast:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10088413	1.00[AMR][1000 genomes]
rs10094086	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10094476	0.86[AFR][1000 genomes]
rs10099006	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10099447	1.00[AMR][1000 genomes]
rs10100402	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10100701	1.00[YRI][hapmap]
rs10103893	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10104103	1.00[AMR][1000 genomes]
rs10104194	0.90[AFR][1000 genomes]
rs10108968	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10109238	0.90[AFR][1000 genomes]
rs10504068	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938362	1.00[AMR][1000 genomes]
rs16938537	1.00[AMR][1000 genomes]
rs16938602	1.00[YRI][hapmap]
rs16938748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938750	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938756	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938764	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938765	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938767	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28377247	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28404323	1.00[AMR][1000 genomes]
rs28477899	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28496662	1.00[AMR][1000 genomes]
rs28556954	0.90[AFR][1000 genomes]
rs28602767	1.00[AMR][1000 genomes]
rs28649400	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28702592	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28709071	0.90[AFR][1000 genomes]
rs28772946	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28781607	0.90[AFR][1000 genomes]
rs28817008	1.00[YRI][hapmap]
rs28861728	0.90[AFR][1000 genomes]
rs56184941	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57965549	1.00[AMR][1000 genomes]
rs58750692	0.86[AFR][1000 genomes]
rs60181153	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60465098	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61184099	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472052	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472053	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472107	1.00[AMR][1000 genomes]
rs6981279	0.84[AFR][1000 genomes]
rs6988916	0.90[AFR][1000 genomes]
rs6992694	1.00[AMR][1000 genomes]
rs7000393	1.00[AMR][1000 genomes]
rs73678167	1.00[AMR][1000 genomes]
rs73678187	0.86[AFR][1000 genomes]
rs73678188	0.86[AFR][1000 genomes]
rs73678200	0.90[AFR][1000 genomes]
rs73678201	0.90[AFR][1000 genomes]
rs73680707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680714	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680715	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680718	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680720	1.00[AMR][1000 genomes]
rs73680726	1.00[AMR][1000 genomes]
rs73680728	1.00[AMR][1000 genomes]
rs7819693	0.90[AFR][1000 genomes]
rs7825162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7826258	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7826724	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7838334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7839672	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7842381	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9298065	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9657076	1.00[YRI][hapmap]
rs9886548	1.00[YRI][hapmap];0.86[AFR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49677600-49690800	Weak transcription	Fetal Lung	lung
2	chr8:49677600-49700200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:49678000-49686000	Weak transcription	Pancreas	Pancrea
4	chr8:49678800-49680600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:49679000-49680600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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