Variant report

Variant	rs16938767
Chromosome Location	chr8:49695334-49695335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49694708..49697435-chr8:49704058..49706751,2	MCF-7	breast:
2	chr8:49692576..49695901-chr8:49698756..49701661,3	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10088413	1.00[AMR][1000 genomes]
rs10094086	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10094476	0.93[AFR][1000 genomes]
rs10099006	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10099447	1.00[AMR][1000 genomes]
rs10100402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10100701	1.00[YRI][hapmap]
rs10103893	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10104103	1.00[AMR][1000 genomes]
rs10104194	0.84[AFR][1000 genomes]
rs10108968	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10109238	0.84[AFR][1000 genomes]
rs10504068	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938362	1.00[AMR][1000 genomes]
rs16938537	1.00[AMR][1000 genomes]
rs16938559	1.00[ASW][hapmap]
rs16938602	0.90[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap]
rs16938740	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938748	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938750	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938756	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938764	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28377247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28404323	1.00[AMR][1000 genomes]
rs28477899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28496662	1.00[AMR][1000 genomes]
rs28556954	0.84[AFR][1000 genomes]
rs28602767	1.00[AMR][1000 genomes]
rs28649400	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28702592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28709071	0.84[AFR][1000 genomes]
rs28772946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28781607	0.84[AFR][1000 genomes]
rs28817008	0.81[LWK][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap]
rs28861728	0.96[AFR][1000 genomes]
rs56184941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57965549	1.00[AMR][1000 genomes]
rs60181153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60465098	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61184099	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472107	1.00[AMR][1000 genomes]
rs6981279	0.90[AFR][1000 genomes]
rs6988916	0.84[AFR][1000 genomes]
rs6992694	1.00[AMR][1000 genomes]
rs7000393	1.00[AMR][1000 genomes]
rs73678167	1.00[AMR][1000 genomes]
rs73678200	0.84[AFR][1000 genomes]
rs73678201	0.84[AFR][1000 genomes]
rs73680707	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680710	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680711	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680720	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680726	1.00[AMR][1000 genomes]
rs73680728	1.00[AMR][1000 genomes]
rs7819693	0.84[AFR][1000 genomes]
rs7825162	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7826258	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7826724	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7838334	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7839672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7842381	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9298065	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9657076	0.90[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap]
rs9886548	0.90[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49677600-49700200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:49686600-49700400	Weak transcription	Esophagus	oesophagus
3	chr8:49690600-49701200	Weak transcription	Ovary	ovary
4	chr8:49691000-49700400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:49691200-49705400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:49691400-49695400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr8:49691400-49695600	Weak transcription	Fetal Kidney	kidney
8	chr8:49691400-49699800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr8:49691600-49699200	Weak transcription	Fetal Lung	lung
10	chr8:49693400-49695600	Weak transcription	Right Atrium	heart
11	chr8:49693400-49698800	Weak transcription	Adipose Nuclei	Adipose
12	chr8:49693400-49699000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr8:49693800-49701200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr8:49694400-49700200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr8:49694800-49700400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:49694800-49700400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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