Variant report

Variant	rs56184941
Chromosome Location	chr8:49699985-49699986
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49698250..49700895-chr8:49829079..49831247,2	MCF-7	breast:
2	chr8:49692576..49695901-chr8:49698756..49701661,3	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10088413	1.00[AMR][1000 genomes]
rs10094086	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10094476	0.93[AFR][1000 genomes]
rs10099006	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10099447	1.00[AMR][1000 genomes]
rs10100402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10103893	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10104103	1.00[AMR][1000 genomes]
rs10104194	0.84[AFR][1000 genomes]
rs10108968	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10109238	0.84[AFR][1000 genomes]
rs10504068	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938362	1.00[AMR][1000 genomes]
rs16938537	1.00[AMR][1000 genomes]
rs16938740	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938748	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938750	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938756	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28377247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28404323	1.00[AMR][1000 genomes]
rs28477899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28496662	1.00[AMR][1000 genomes]
rs28556954	0.84[AFR][1000 genomes]
rs28602767	1.00[AMR][1000 genomes]
rs28649400	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28702592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28709071	0.84[AFR][1000 genomes]
rs28772946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28781607	0.84[AFR][1000 genomes]
rs28861728	0.96[AFR][1000 genomes]
rs57965549	1.00[AMR][1000 genomes]
rs60181153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60465098	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61184099	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472107	1.00[AMR][1000 genomes]
rs6981279	0.90[AFR][1000 genomes]
rs6988916	0.84[AFR][1000 genomes]
rs6992694	1.00[AMR][1000 genomes]
rs7000393	1.00[AMR][1000 genomes]
rs73678167	1.00[AMR][1000 genomes]
rs73678200	0.84[AFR][1000 genomes]
rs73678201	0.84[AFR][1000 genomes]
rs73680707	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680710	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680711	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680720	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680726	1.00[AMR][1000 genomes]
rs73680728	1.00[AMR][1000 genomes]
rs7819693	0.84[AFR][1000 genomes]
rs7825162	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7826258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7826724	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7838334	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7839672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7842381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9298065	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49677600-49700200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:49686600-49700400	Weak transcription	Esophagus	oesophagus
3	chr8:49690600-49701200	Weak transcription	Ovary	ovary
4	chr8:49691000-49700400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:49691200-49705400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:49693800-49701200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr8:49694400-49700200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr8:49694800-49700400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:49694800-49700400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr8:49696000-49700000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr8:49696200-49700600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:49696200-49700800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr8:49696400-49701000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr8:49696400-49701200	Weak transcription	Fetal Kidney	kidney
15	chr8:49698200-49703000	Enhancers	HMEC	breast
16	chr8:49698800-49700000	Enhancers	Adipose Nuclei	Adipose
17	chr8:49698800-49701200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr8:49698800-49704000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr8:49699000-49700200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:49699000-49701200	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr8:49699000-49701200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:49699000-49701600	Enhancers	NHEK	skin
23	chr8:49699000-49702000	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr8:49699000-49702000	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr8:49699000-49702200	Enhancers	HUVEC	blood vessel
26	chr8:49699000-49703000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr8:49699000-49705600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr8:49699200-49700000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr8:49699200-49700000	Enhancers	Fetal Brain Male	brain
30	chr8:49699200-49700000	Enhancers	Fetal Lung	lung
31	chr8:49699200-49700200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr8:49699200-49700400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr8:49699200-49700600	Enhancers	Osteobl	bone
34	chr8:49699200-49701200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr8:49699200-49701200	Enhancers	NHDF-Ad	bronchial
36	chr8:49699200-49701800	Enhancers	Left Ventricle	heart
37	chr8:49699200-49702200	Enhancers	Placenta Amnion	Placenta Amnion
38	chr8:49699200-49703000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr8:49699400-49700400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr8:49699400-49700400	Weak transcription	NHLF	lung
41	chr8:49699400-49700800	Weak transcription	A549	lung
42	chr8:49699400-49701200	Weak transcription	HSMM	muscle
43	chr8:49699400-49705600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr8:49699600-49700600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr8:49699600-49701200	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr8:49699800-49700000	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr8:49699800-49700000	Enhancers	Duodenum Mucosa	Duodenum
48	chr8:49699800-49700000	Enhancers	Stomach Smooth Muscle	stomach
49	chr8:49699800-49701200	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr8:49699800-49701200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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