Variant report

Variant	rs10099006
Chromosome Location	chr8:49687414-49687415
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10088413	1.00[AMR][1000 genomes]
rs10094086	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10094476	0.83[AFR][1000 genomes]
rs10099447	1.00[AMR][1000 genomes]
rs10100402	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10100701	1.00[YRI][hapmap]
rs10103893	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10104103	1.00[AMR][1000 genomes]
rs10104194	0.87[AFR][1000 genomes]
rs10108968	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10109238	0.87[AFR][1000 genomes]
rs10504068	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938362	1.00[AMR][1000 genomes]
rs16938537	1.00[AMR][1000 genomes]
rs16938602	1.00[YRI][hapmap]
rs16938740	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938748	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938750	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938756	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938764	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938765	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938767	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28377247	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28404323	1.00[AMR][1000 genomes]
rs28477899	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28496662	1.00[AMR][1000 genomes]
rs28556954	0.87[AFR][1000 genomes]
rs28602767	1.00[AMR][1000 genomes]
rs28649400	1.00[AMR][1000 genomes]
rs28702592	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28709071	0.87[AFR][1000 genomes]
rs28772946	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28781607	0.87[AFR][1000 genomes]
rs28817008	1.00[YRI][hapmap]
rs28861728	0.86[AFR][1000 genomes]
rs56184941	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57965549	1.00[AMR][1000 genomes]
rs58750692	0.83[AFR][1000 genomes]
rs60181153	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60465098	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61184099	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472052	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472053	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472107	1.00[AMR][1000 genomes]
rs6981279	0.81[AFR][1000 genomes]
rs6988916	0.87[AFR][1000 genomes]
rs6992694	1.00[AMR][1000 genomes]
rs7000393	1.00[AMR][1000 genomes]
rs73678167	1.00[AMR][1000 genomes]
rs73678187	0.83[AFR][1000 genomes]
rs73678188	0.83[AFR][1000 genomes]
rs73678200	0.87[AFR][1000 genomes]
rs73678201	0.87[AFR][1000 genomes]
rs73680707	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680710	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680711	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680714	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680715	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680718	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680720	1.00[AMR][1000 genomes]
rs73680726	1.00[AMR][1000 genomes]
rs73680728	1.00[AMR][1000 genomes]
rs7819693	0.87[AFR][1000 genomes]
rs7825162	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7826258	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7826724	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7838334	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7839672	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7842381	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9298065	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9657076	1.00[YRI][hapmap]
rs9886548	1.00[YRI][hapmap];0.83[AFR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49677600-49690800	Weak transcription	Fetal Lung	lung
2	chr8:49677600-49700200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:49683000-49687600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:49686600-49700400	Weak transcription	Esophagus	oesophagus
5	chr8:49686800-49689000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:49686800-49690000	Weak transcription	Fetal Kidney	kidney
7	chr8:49687000-49690200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:49687000-49690400	Weak transcription	Pancreas	Pancrea
9	chr8:49687000-49693000	Weak transcription	Fetal Muscle Leg	muscle

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