Variant report

Variant	rs9886548
Chromosome Location	chr8:49640578-49640579
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10089076	1.00[AMR][1000 genomes]
rs10090292	1.00[AMR][1000 genomes]
rs10094086	0.83[AFR][1000 genomes]
rs10098793	1.00[AMR][1000 genomes]
rs10099006	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs10099443	1.00[AMR][1000 genomes]
rs10100701	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10104194	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10108968	1.00[YRI][hapmap]
rs10109238	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10504068	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs1384218	1.00[AMR][1000 genomes]
rs16938326	1.00[AMR][1000 genomes]
rs16938489	1.00[AMR][1000 genomes]
rs16938498	1.00[AMR][1000 genomes]
rs16938500	1.00[AMR][1000 genomes]
rs16938602	1.00[ASW][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938740	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs16938748	0.86[AFR][1000 genomes]
rs16938750	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs16938756	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs16938764	1.00[YRI][hapmap]
rs16938767	0.90[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap]
rs28434187	0.90[AFR][1000 genomes]
rs28556954	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28573934	1.00[AMR][1000 genomes]
rs28709071	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28781607	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28817008	1.00[ASW][hapmap];0.90[LWK][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28861728	0.83[AFR][1000 genomes]
rs56177835	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56787106	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56795854	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58750692	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61598535	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6988916	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7017560	1.00[AMR][1000 genomes]
rs73678173	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678200	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678201	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680707	0.86[AFR][1000 genomes]
rs73680710	0.86[AFR][1000 genomes]
rs73680711	0.86[AFR][1000 genomes]
rs7819693	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7823444	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7825162	0.86[AFR][1000 genomes]
rs7826258	1.00[YRI][hapmap]
rs7826724	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs7838334	0.86[AFR][1000 genomes]
rs7842381	1.00[YRI][hapmap]
rs9298065	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9657076	1.00[ASW][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9694357	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3323191	chr8:49636899-49641497	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49627000-49647200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:49627800-49647400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:49633200-49647200	Weak transcription	Ovary	ovary
4	chr8:49639800-49647000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr8:49640000-49642000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr8:49640200-49641200	Strong transcription	Fetal Lung	lung

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