Variant report

Variant	rs28556954
Chromosome Location	chr8:49662318-49662319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49657699..49660104-chr8:49660800..49663399,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10089076	1.00[AMR][1000 genomes]
rs10090292	1.00[AMR][1000 genomes]
rs10094086	0.87[AFR][1000 genomes]
rs10098793	1.00[AMR][1000 genomes]
rs10099006	0.87[AFR][1000 genomes]
rs10099443	1.00[AMR][1000 genomes]
rs10100402	0.84[AFR][1000 genomes]
rs10100701	1.00[AMR][1000 genomes]
rs10104194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10108968	0.84[AFR][1000 genomes]
rs10109238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10504068	0.90[AFR][1000 genomes]
rs1384218	1.00[AMR][1000 genomes]
rs16938326	1.00[AMR][1000 genomes]
rs16938489	1.00[AMR][1000 genomes]
rs16938498	1.00[AMR][1000 genomes]
rs16938500	1.00[AMR][1000 genomes]
rs16938602	1.00[AMR][1000 genomes]
rs16938740	0.90[AFR][1000 genomes]
rs16938748	0.90[AFR][1000 genomes]
rs16938750	0.90[AFR][1000 genomes]
rs16938756	0.90[AFR][1000 genomes]
rs16938764	0.84[AFR][1000 genomes]
rs16938765	0.84[AFR][1000 genomes]
rs16938767	0.84[AFR][1000 genomes]
rs28377247	0.84[AFR][1000 genomes]
rs28477899	0.84[AFR][1000 genomes]
rs28573934	1.00[AMR][1000 genomes]
rs28702592	0.84[AFR][1000 genomes]
rs28709071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28772946	0.84[AFR][1000 genomes]
rs28781607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28817008	1.00[AMR][1000 genomes]
rs28861728	0.87[AFR][1000 genomes]
rs56177835	1.00[AMR][1000 genomes]
rs56184941	0.84[AFR][1000 genomes]
rs56787106	1.00[AMR][1000 genomes]
rs56795854	1.00[AMR][1000 genomes]
rs58750692	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60181153	0.84[AFR][1000 genomes]
rs61184099	0.84[AFR][1000 genomes]
rs61598535	1.00[AMR][1000 genomes]
rs6472052	0.84[AFR][1000 genomes]
rs6472053	0.84[AFR][1000 genomes]
rs6988916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7017560	1.00[AMR][1000 genomes]
rs73678173	1.00[AMR][1000 genomes]
rs73678187	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678188	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680707	0.90[AFR][1000 genomes]
rs73680710	0.90[AFR][1000 genomes]
rs73680711	0.90[AFR][1000 genomes]
rs73680714	0.84[AFR][1000 genomes]
rs73680715	0.84[AFR][1000 genomes]
rs73680718	0.84[AFR][1000 genomes]
rs7819693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7823444	1.00[AMR][1000 genomes]
rs7825162	0.90[AFR][1000 genomes]
rs7826258	0.84[AFR][1000 genomes]
rs7826724	0.90[AFR][1000 genomes]
rs7838334	0.90[AFR][1000 genomes]
rs7839672	0.84[AFR][1000 genomes]
rs7842381	0.84[AFR][1000 genomes]
rs9298065	0.90[AFR][1000 genomes]
rs9657076	1.00[AMR][1000 genomes]
rs9694357	1.00[AMR][1000 genomes]
rs9886548	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761425	chr8:49658066-49669601	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49656800-49662400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:49660400-49662400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:49661000-49668200	Weak transcription	Pancreas	Pancrea
4	chr8:49661200-49662400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:49661400-49666000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr8:49661600-49666000	Weak transcription	Osteobl	bone
7	chr8:49661800-49665400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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