Variant report

Variant	rs28649400
Chromosome Location	chr8:49728188-49728189
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49726188..49729187-chr8:49729418..49731051,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10088413	1.00[AMR][1000 genomes]
rs10094086	1.00[AMR][1000 genomes]
rs10094476	0.94[AFR][1000 genomes]
rs10099006	1.00[AMR][1000 genomes]
rs10099447	1.00[AMR][1000 genomes]
rs10100402	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10103893	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10104103	1.00[AMR][1000 genomes]
rs10108968	1.00[AMR][1000 genomes]
rs10504068	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938362	1.00[AMR][1000 genomes]
rs16938537	1.00[AMR][1000 genomes]
rs16938740	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938748	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938750	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938756	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938764	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938765	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938767	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28377247	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28404323	1.00[AMR][1000 genomes]
rs28477899	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28496662	1.00[AMR][1000 genomes]
rs28602767	1.00[AMR][1000 genomes]
rs28702592	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28772946	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28861728	0.84[AFR][1000 genomes]
rs56184941	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57965549	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60181153	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60465098	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61184099	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472052	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472053	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472107	1.00[AMR][1000 genomes]
rs6992694	1.00[AMR][1000 genomes]
rs7000393	1.00[AMR][1000 genomes]
rs73678167	1.00[AMR][1000 genomes]
rs73680707	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680710	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680711	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680714	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680715	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680718	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680720	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680726	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680728	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7825162	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7826258	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7826724	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7838334	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7839672	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7842381	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9298065	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526887	chr8:49724699-49729020	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49723200-49730800	Weak transcription	Spleen	Spleen
2	chr8:49724000-49728600	Weak transcription	Fetal Lung	lung
3	chr8:49724400-49730400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr8:49726400-49729800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr8:49726600-49729600	Enhancers	Adipose Nuclei	Adipose
6	chr8:49726800-49730600	Weak transcription	Osteobl	bone
7	chr8:49726800-49731200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:49727000-49728800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:49727000-49730000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:49727000-49730000	Enhancers	Pancreas	Pancrea
11	chr8:49727200-49729600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:49727400-49730600	Weak transcription	NH-A	brain
13	chr8:49727600-49728800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr8:49727600-49732600	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr8:49727800-49728200	Enhancers	NHLF	lung
16	chr8:49727800-49728600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr8:49727800-49730600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr8:49727800-49730800	Weak transcription	Esophagus	oesophagus
19	chr8:49728000-49728800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr8:49728000-49729200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr8:49728000-49730600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr8:49728000-49730600	Weak transcription	Hela-S3	cervix
23	chr8:49728000-49731000	Weak transcription	Placenta	Placenta
24	chr8:49728000-49732400	Weak transcription	Monocytes-CD14+_RO01746	blood

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